PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | evm_27.model.AmTr_v1.0_scaffold00155.58 | ||||||||
Common Name | AMTR_s00155p00085360 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
|
||||||||
Family | GATA | ||||||||
Protein Properties | Length: 492aa MW: 56855.9 Da PI: 6.523 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 54.3 | 1.8e-17 | 400 | 433 | 1 | 34 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 C +C t kTp+WR+gp+g+ktLCnaCG++y + + evm_27.model.AmTr_v1.0_scaffold00155.58 400 CMHCFTEKTPQWRKGPRGPKTLCNACGVRYMSGR 433 99****************************8776 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50114 | 11.411 | 394 | 429 | IPR000679 | Zinc finger, GATA-type |
SMART | SM00401 | 1.3E-15 | 394 | 444 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 8.55E-15 | 396 | 456 | No hit | No description |
Gene3D | G3DSA:3.30.50.10 | 2.8E-14 | 398 | 430 | IPR013088 | Zinc finger, NHR/GATA-type |
CDD | cd00202 | 2.85E-14 | 399 | 446 | No hit | No description |
PROSITE pattern | PS00344 | 0 | 400 | 425 | IPR000679 | Zinc finger, GATA-type |
Pfam | PF00320 | 4.3E-15 | 400 | 434 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 492 aa Download sequence Send to blast |
MFNGQSDDIT NHKWLSCFIE DVYFRSSESL AKVQASTPLK QEQVTSSMLD KRVEIWRQSS 60 TPLEQVTSSM LDKKVEIWRQ SSTPLMQEVE KEQVTGSMLD KEVEKEQVTG SMLDKKVEKE 120 QVTGSMFDKE MKNWILPSTP LRQKQVRGSM LDKKVEIWSS DNEPTSVLDA KFSDDSPSHE 180 NTSSEMEIWR ADNEPTSVLN AKFSNDTTHE NTLRDMDLED NFSSMTDPIY SEPTHHKTLQ 240 VEDTNIITTC KFEKDFSEIP REKSLRLMSG IDSFSTVIDP NPNDIEPTSQ FIVKNSESPD 300 YKTLNLKSTD SNDAWDFNVP FPEIPDAKTL RSIAQDYRSS TMFDTPYPKR SRSRRKPRKF 360 WHLLVPNTSK KQRQFRDRLN KLSISQIMIS GESSRFVRRC MHCFTEKTPQ WRKGPRGPKT 420 LCNACGVRYM SGRLLPEYRP ADSPTFVPSQ HSNSHRKVIQ MRQRREIHQM TTTMANENDD 480 CCSLDLESDF L* |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 348 | 353 | KRSRSR |
2 | 351 | 357 | RSRRKPR |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_020523911.1 | 0.0 | uncharacterized protein LOC110007401 | ||||
TrEMBL | W1PI85 | 0.0 | W1PI85_AMBTC; Uncharacterized protein | ||||
STRING | ERN07703 | 0.0 | (Amborella trichopoda) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP68 | 17 | 287 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G32890.1 | 1e-36 | GATA transcription factor 9 |
Link Out ? help Back to Top | |
---|---|
Phytozome | evm_27.model.AmTr_v1.0_scaffold00155.58 |
Publications ? help Back to Top | |||
---|---|---|---|
|