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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
Back to Top |
| TF ID |
evm_27.model.AmTr_v1.0_scaffold00151.20 |
| Common Name | AMTR_s00151p00084810 |
| Organism |
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| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
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| Family |
C3H |
| Protein Properties |
Length: 348aa MW: 38688.3 Da PI: 9.8017 |
| Description |
C3H family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| evm_27.model.AmTr_v1.0_scaffold00151.20 | genome | TAGP | View CDS |
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| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | zf-CCCH | 29.6 | 1.2e-09 | 76 | 97 | 4 | 26 |
---SGGGGTS--TTTTT-SS-SS CS
zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26
+lC+f+++ G C+ G +CkF+H+
evm_27.model.AmTr_v1.0_scaffold00151.20 76 VLCQFYMK-GRCNLGLSCKFSHD 97
79******.*************7 PP
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| 2 | zf-CCCH | 20.6 | 8.1e-07 | 131 | 151 | 5 | 25 |
--SGGGGTS--TTTTT-SS-S CS
zf-CCCH 5 lCrffartGtCkyGdrCkFaH 25
+Cr f ++GtC Gd+C+F+H
evm_27.model.AmTr_v1.0_scaffold00151.20 131 PCRVFVANGTCLKGDKCPFSH 151
7******************** PP
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| Protein Features
? help Back to Top |
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| Database |
Entry ID |
E-value |
Start |
End |
InterPro ID |
Description |
| PROSITE profile | PS50103 | 14.699 | 72 | 99 | IPR000571 | Zinc finger, CCCH-type |
| SMART | SM00356 | 1.0E-4 | 73 | 98 | IPR000571 | Zinc finger, CCCH-type |
| SuperFamily | SSF90229 | 4.45E-6 | 73 | 97 | IPR000571 | Zinc finger, CCCH-type |
| Pfam | PF00642 | 4.0E-7 | 75 | 97 | IPR000571 | Zinc finger, CCCH-type |
| Gene3D | G3DSA:4.10.1000.10 | 7.7E-4 | 77 | 97 | IPR000571 | Zinc finger, CCCH-type |
| PROSITE profile | PS50103 | 9.516 | 101 | 125 | IPR000571 | Zinc finger, CCCH-type |
| SMART | SM00356 | 0.75 | 101 | 127 | IPR000571 | Zinc finger, CCCH-type |
| SuperFamily | SSF90229 | 6.67E-5 | 103 | 126 | IPR000571 | Zinc finger, CCCH-type |
| PROSITE profile | PS50103 | 12.69 | 126 | 154 | IPR000571 | Zinc finger, CCCH-type |
| SMART | SM00356 | 0.046 | 128 | 153 | IPR000571 | Zinc finger, CCCH-type |
| SuperFamily | SSF90229 | 1.23E-7 | 130 | 168 | IPR000571 | Zinc finger, CCCH-type |
| Gene3D | G3DSA:4.10.1000.10 | 6.8E-4 | 131 | 152 | IPR000571 | Zinc finger, CCCH-type |
| Sequence ? help Back to Top |
| Protein Sequence Length: 348 aa
Download sequence Send
to blast |
MQNHAMHVQN AWHALEEIPE IMDAKESRKR GKHGPLTEER KAKKKLAKKR QRAKKNKELG 60
IKRLKLMPVT KAKPVVLCQF YMKGRCNLGL SCKFSHDTIP LTKSKPCKYL ISNSCLKGQD 120
CPYDHDLSNY PCRVFVANGT CLKGDKCPFS HKMPPPEQLS QVLSCVQETH TPDSKTIPEE 180
KLNTSGSLIG TGHKEWAWGK PFTPPAEVPE GITFFSFGNA PNNNIKQQTR PSPPLEDQGH 240
LDKYMQCVGI FANEHLKTLM PEGNESQNSL AIHKSVSRKL ASKDKYEPER MVGQSNQGSS 300
FHTGVSNMIK SSSESLSSTP INAGKNSNLS KNASQILEEF LFSGTQL*
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