PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella

Family

ERF

Protein Properties

Length: 160aa MW: 17940.5 Da PI: 7.7763

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00150.32	genome	TAGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	60.4	4.1e-19	6	55	2	55
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr+++ +g+Wv+eIr+p +r++lg+f tae+Aa+a+++a++ + g evm_27.model.AmTr_v1.0_scaffold00150.32 6 RYRGVRQRH-WGSWVSEIRHP-----LlkTRIWLGTFETAEDAARAYDEAARFMCG 55 69****9.******8.....334********************99876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00018	1.97E-33	5	65	No hit	No description
SuperFamily	SSF54171	2.62E-21	6	65	IPR016177	DNA-binding domain
PROSITE profile	PS51032	20.732	6	63	IPR001471	AP2/ERF domain
Gene3D	G3DSA:3.30.730.10	6.2E-34	6	64	IPR001471	AP2/ERF domain
SMART	SM00380	4.6E-40	6	69	IPR001471	AP2/ERF domain
Pfam	PF00847	2.3E-12	6	55	IPR001471	AP2/ERF domain
PRINTS	PR00367	2.4E-11	7	18	IPR001471	AP2/ERF domain
PRINTS	PR00367	2.4E-11	29	45	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 160 aa Download sequence Send to blast
MARMQRYRGV RQRHWGSWVS EIRHPLLKTR IWLGTFETAE DAARAYDEAA RFMCGPCART 60 NFPYSPNASQ SASTKFLSPN LTAKLQRCQM ASLQLQAAKP SVSSPSQQKI PAGGPPENGW 120 VLKVEIESGE QMNRLEDEFI EQMIEELMDC GSCIELRCA*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2gcc_A	3e-17	2	70	1	70	ATERF1
3gcc_A	3e-17	2	70	1	70	ATERF1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00526	DAP	Transfer from AT5G25190	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006846881.1	1e-117	ethylene-responsive transcription factor ERF003
Swissprot	Q94AW5	6e-54	ERF03_ARATH; Ethylene-responsive transcription factor ERF003
TrEMBL	W1PES3	1e-115	W1PES3_AMBTC; Uncharacterized protein
STRING	ERN08462	1e-116	(Amborella trichopoda)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP6	16	1718

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G25190.1	4e-45	ERF family protein

Link Out ? help Back to Top
Phytozome	evm_27.model.AmTr_v1.0_scaffold00150.32
Entrez Gene	18436591

Publications ? help Back to Top
Amborella Genome Project The Amborella genome and the evolution of flowering plants. Science, 2013. 342(6165): p. 1241089 [PMID:24357323] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]