PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm_27.model.AmTr_v1.0_scaffold00149.12
Common NameAMTR_s00149p00035260, LOC18437390
Organism
Amborella trichopoda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
Family ARR-B
Protein Properties Length: 576aa    MW: 63637 Da    PI: 6.54
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00149.12genomeTAGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like89.92.3e-28335389156
                                  G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 
                                              k +++WtpeLH+rFv+aveqL G+++A+P++ilelmkv+gLt+++v+SHLQkYR++
  evm_27.model.AmTr_v1.0_scaffold00149.12 335 KMKVDWTPELHRRFVQAVEQL-GIDQAIPSRILELMKVEGLTRHNVASHLQKYRIH 389
                                              5689*****************.********************************86 PP
2Response_reg29.53.9e-11201261109
                                              EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHH..HHHHESEEEEESSCTTSEHHHHHHHHHHH CS
                             Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealell..kekdpDlillDiempgmdGlellkeiree 68 
                                              vl+ d++   +e +++ lek +y +v ++ d  eal+ l   ++++++ ++ ++    +G+   k ++++
  evm_27.model.AmTr_v1.0_scaffold00149.12  20 VLLLDEDSQCAEEIKSKLEKMEY-IVSTFYDENEALAALssTAENFHVAIVEVNTGANHGS--YKFLETA 86 
                                              79999******************.***************555566***********98886..4555554 PP

                                              TTTSEEEEEESTTTHHHHHHHHHTTESEEEESS--HHHHHH CS
                             Response_reg  69 epklpiivvtahgeeedalealkaGakdflsKpfdpeelvk 109
                                                +lp i+v+     +++ +++ +Ga +fl Kp ++++l +
  evm_27.model.AmTr_v1.0_scaffold00149.12  87 R-DLPTIMVSNIRCLSTMMKCIALGAAEFLQKPLSEDKLKN 126
                                              4.799******99************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF521721.25E-1416134IPR011006CheY-like superfamily
Gene3DG3DSA:3.40.50.23006.1E-1616150No hitNo description
PROSITE profilePS5011019.6219132IPR001789Signal transduction response regulator, receiver domain
PfamPF000722.5E-820126IPR001789Signal transduction response regulator, receiver domain
CDDcd001562.33E-821131No hitNo description
PROSITE profilePS5129415.843332391IPR017930Myb domain
Gene3DG3DSA:1.10.10.609.2E-28333391IPR009057Homeodomain-like
SuperFamilySSF466899.86E-19334392IPR009057Homeodomain-like
TIGRFAMsTIGR015574.5E-26335389IPR006447Myb domain, plants
PfamPF002491.3E-7338387IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 576 aa     Download sequence    Send to blast
MVCSADELVE WRDFPKGLRV LLLDEDSQCA EEIKSKLEKM EYIVSTFYDE NEALAALSST  60
AENFHVAIVE VNTGANHGSY KFLETARDLP TIMVSNIRCL STMMKCIALG AAEFLQKPLS  120
EDKLKNIWQH VVHKAFNAGG DLSKSLKPLK ETVASMLQLP ANEAEHLSLK PLKTEQTCSP  180
SAENEVKPKP LVMNERFPAP STPQLEQGER VADQGDGHEL PNSSEEKETI AKDGLFSKLE  240
KQSFSESKSV ENTCDKSVCL DAPAPEENSS LGPIIGAEEE VDSAEGSKLE EGESTNHSTM  300
SCHSRKGEKG ECTSPSKRKK GIAVPPNPCN SSRKKMKVDW TPELHRRFVQ AVEQLGIDQA  360
IPSRILELMK VEGLTRHNVA SHLQKYRIHR RHVLPKEDLG GRRNWVHREP LPRAYTNKPL  420
IALPPLQPSG CPPPLFPVWG HPSNYATTSS IHGWGPTWQP RVHADAWGCP VLPMPGSCVY  480
YPQNNASSCF GVDHGNDSGS DAWKNFLDLH PAESVIDEVV KEAISKPWLP LPLGLNPPST  540
DSVLSELQRQ GITSIPPPPP PPPPHHRRHH HNHNT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5lxu_A6e-17340389655Transcription factor LUX
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006847667.10.0two-component response regulator-like APRR2
RefseqXP_011624556.10.0two-component response regulator-like APRR2
RefseqXP_011624557.10.0two-component response regulator-like APRR2
RefseqXP_020524836.10.0two-component response regulator-like APRR2
RefseqXP_020524837.10.0two-component response regulator-like APRR2
RefseqXP_020524838.10.0two-component response regulator-like APRR2
RefseqXP_020524839.10.0two-component response regulator-like APRR2
RefseqXP_020524840.10.0two-component response regulator-like APRR2
RefseqXP_020524841.10.0two-component response regulator-like APRR2
RefseqXP_020524842.10.0two-component response regulator-like APRR2
TrEMBLW1PMH70.0W1PMH7_AMBTC; Uncharacterized protein
STRINGERN092480.0(Amborella trichopoda)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP9166813
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18020.61e-126ARR-B family protein
Publications ? help Back to Top
  1. Amborella Genome Project
    The Amborella genome and the evolution of flowering plants.
    Science, 2013. 342(6165): p. 1241089
    [PMID:24357323]