PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm_27.model.AmTr_v1.0_scaffold00140.17
Common NameAMTR_s00140p00045380
Organism
Amborella trichopoda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
Family M-type_MADS
Protein Properties Length: 368aa    MW: 41216.4 Da    PI: 4.9692
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00140.17genomeTAGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF55.29e-181058250
                                             ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
                                   SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                                             ri++k +r+v+fskR+ g++KKA  L  L++aev ++i+s+ g+l++y 
  evm_27.model.AmTr_v1.0_scaffold00140.17 10 RISDKNKRHVSFSKRKGGLFKKAGKLASLTGAEVGIMIISEGGRLFTYG 58
                                             8**********************************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004322.2E-19160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006620.955161IPR002100Transcription factor, MADS-box
PRINTSPR004043.5E-12323IPR002100Transcription factor, MADS-box
SuperFamilySSF554558.89E-20474IPR002100Transcription factor, MADS-box
PfamPF003193.7E-181057IPR002100Transcription factor, MADS-box
PRINTSPR004043.5E-122338IPR002100Transcription factor, MADS-box
PRINTSPR004043.5E-123859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 368 aa     Download sequence    Send to blast
MTHRNKEITR ISDKNKRHVS FSKRKGGLFK KAGKLASLTG AEVGIMIISE GGRLFTYGSP  60
SIDDIITKYL QGPQLLNESH RKHLQCLSTL HSKIQSQFED ATELFNDLQT LKEKWVKLDM  120
HSKDIFEMEI QELKEYVSFL QVLREKAFML PENGDNNVNL DCVESSCQTL YQENSHEDLT  180
STSSLPKHLI HQQRVKDMNI HLCSGEFGPK HLYPEYENVE MGCSFGLSEV SDLDHHGSIN  240
AMNVCFSNGE CGPLFLCPQD EGIEISSSLD LSETCDWNHL GSIKYMNSFL CNGEFRPKNL  300
YPQDENFEMG CSFGLSEISD LNHHGSINGM NVCFSNGEYE PPFMCSEDEG IGMSNSLGLS  360
GIVAGII*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020522127.10.0agamous-like MADS-box protein AGL62
TrEMBLW1PAQ90.0W1PAQ9_AMBTC; Uncharacterized protein
STRINGERN047690.0(Amborella trichopoda)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP1617761
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34440.15e-08AGAMOUS-like 29
Publications ? help Back to Top
  1. Amborella Genome Project
    The Amborella genome and the evolution of flowering plants.
    Science, 2013. 342(6165): p. 1241089
    [PMID:24357323]