PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm_27.model.AmTr_v1.0_scaffold00139.3
Common NameAMTR_s00139p00027000, LOC18421765
Organism
Amborella trichopoda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
Family C2H2
Protein Properties Length: 251aa    MW: 26837.3 Da    PI: 9.8792
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00139.3genomeTAGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.50.00017799123
                                            EEETTTTEEESSHHHHHHHHHHT CS
                                 zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                                            y C+ Cgk++ ++  L  H+++H
  evm_27.model.AmTr_v1.0_scaffold00139.3 77 YLCTMCGKRYVSSQALGAHQNSH 99
                                            56*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.602.4E-569100IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.25E-673103No hitNo description
PROSITE profilePS5015710.82477104IPR007087Zinc finger, C2H2
PROSITE patternPS0002807999IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 251 aa     Download sequence    Send to blast
MASSSRNHPS SSNGVPSSQW HHVNVIPRTL VFSPTLSIPP HPSTTVATVT TTAPAPASPQ  60
VPNPVAPRRS GCGAKRYLCT MCGKRYVSSQ ALGAHQNSHR IEQIILKRAQ RNYRIALEND  120
VKEAFLDAKI VNPLPPHSAN EQLSPSSSSS SSQMPAPLPP HPQRTLSLLP PPQRHVPHFS  180
GYGQAIPSHF GPHAFLVSGA GEINSLRGQQ PISEHQPVHE GLSSKVPNLE LSLGLSTDTG  240
NNELDLTLHL *
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006826633.11e-180uncharacterized protein LOC18421765
TrEMBLW1NFC21e-179W1NFC2_AMBTC; Uncharacterized protein
STRINGERM938701e-180(Amborella trichopoda)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25160.15e-07zinc finger protein 3
Publications ? help Back to Top
  1. Amborella Genome Project
    The Amborella genome and the evolution of flowering plants.
    Science, 2013. 342(6165): p. 1241089
    [PMID:24357323]