PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm_27.model.AmTr_v1.0_scaffold00138.31
Common NameAMTR_s00138p00062920
Organism
Amborella trichopoda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
Family bZIP
Protein Properties Length: 341aa    MW: 37206.1 Da    PI: 6.1942
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00138.31genomeTAGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_157.23.6e-18234296163
                                              XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
                                   bZIP_1   1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                                              eke+krerrk +NRe+ArrsR+RK+ e+e+L ++v++L++e +aL  ele+l++e+++   e+
  evm_27.model.AmTr_v1.0_scaffold00138.31 234 EKERKRERRKLSNRESARRSRLRKQVECEKLSNRVENLTEEKQALEAELEHLQEECDRFAEEN 296
                                              89******************************************************9887766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF077777.7E-13170IPR012900G-box binding protein, multifunctional mosaic region
PfamPF165965.3E-2392209No hitNo description
Gene3DG3DSA:1.20.5.1704.9E-17229292No hitNo description
SMARTSM003385.3E-17234298IPR004827Basic-leucine zipper domain
PfamPF001701.2E-15234295IPR004827Basic-leucine zipper domain
PROSITE profilePS5021712.553236299IPR004827Basic-leucine zipper domain
SuperFamilySSF579596.06E-10238292No hitNo description
PROSITE patternPS000360241256IPR004827Basic-leucine zipper domain
CDDcd147021.45E-15244290No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 341 aa     Download sequence    Send to blast
MGNEEMDAPA KTSKASSLQE QLPTSVPAMV YSDWHQAFYN SAGTTPIPSP FFHSPVPSGP  60
QAHPFMWGSQ GNAHGADLES KSSKGKVRTR PKRFKESLGS LNMLTSRSNE MGVGASRNVL  120
FSQSRESGSE ASSAGSDANS QTGSHEKPPN QGPVEGDDAQ DGNSDTRALS SQTLMNQTMT  180
LMPMPPSGIG GPMTNLNIGT DYWSASSPSP MATIRGKHPA SGTKPSIESW LKDEKERKRE  240
RRKLSNRESA RRSRLRKQVE CEKLSNRVEN LTEEKQALEA ELEHLQEECD RFAEENSSLN  300
INRTEWVLLV SESDPQDSLE LAHIGALALP EEPKNHHVSP *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1235243ERKRERRKL
2250256RRSRLRK
3250257RRSRLRKQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF7548031e-124KF754803.1 Amborella trichopoda chromosome I mitochondrion, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020517980.10.0bZIP transcription factor 16 isoform X2
TrEMBLW1NEJ10.0W1NEJ1_AMBTC; Uncharacterized protein
STRINGERM938360.0(Amborella trichopoda)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP7001767
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G35530.19e-25basic region/leucine zipper transcription factor 16
Publications ? help Back to Top
  1. Amborella Genome Project
    The Amborella genome and the evolution of flowering plants.
    Science, 2013. 342(6165): p. 1241089
    [PMID:24357323]