PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | evm_27.model.AmTr_v1.0_scaffold00138.31 | ||||||||
Common Name | AMTR_s00138p00062920 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
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Family | bZIP | ||||||||
Protein Properties | Length: 341aa MW: 37206.1 Da PI: 6.1942 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 57.2 | 3.6e-18 | 234 | 296 | 1 | 63 |
XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 eke+krerrk +NRe+ArrsR+RK+ e+e+L ++v++L++e +aL ele+l++e+++ e+ evm_27.model.AmTr_v1.0_scaffold00138.31 234 EKERKRERRKLSNRESARRSRLRKQVECEKLSNRVENLTEEKQALEAELEHLQEECDRFAEEN 296 89******************************************************9887766 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF07777 | 7.7E-13 | 1 | 70 | IPR012900 | G-box binding protein, multifunctional mosaic region |
Pfam | PF16596 | 5.3E-23 | 92 | 209 | No hit | No description |
Gene3D | G3DSA:1.20.5.170 | 4.9E-17 | 229 | 292 | No hit | No description |
SMART | SM00338 | 5.3E-17 | 234 | 298 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF00170 | 1.2E-15 | 234 | 295 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 12.553 | 236 | 299 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 6.06E-10 | 238 | 292 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 241 | 256 | IPR004827 | Basic-leucine zipper domain |
CDD | cd14702 | 1.45E-15 | 244 | 290 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 341 aa Download sequence Send to blast |
MGNEEMDAPA KTSKASSLQE QLPTSVPAMV YSDWHQAFYN SAGTTPIPSP FFHSPVPSGP 60 QAHPFMWGSQ GNAHGADLES KSSKGKVRTR PKRFKESLGS LNMLTSRSNE MGVGASRNVL 120 FSQSRESGSE ASSAGSDANS QTGSHEKPPN QGPVEGDDAQ DGNSDTRALS SQTLMNQTMT 180 LMPMPPSGIG GPMTNLNIGT DYWSASSPSP MATIRGKHPA SGTKPSIESW LKDEKERKRE 240 RRKLSNRESA RRSRLRKQVE CEKLSNRVEN LTEEKQALEA ELEHLQEECD RFAEENSSLN 300 INRTEWVLLV SESDPQDSLE LAHIGALALP EEPKNHHVSP * |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 235 | 243 | ERKRERRKL |
2 | 250 | 256 | RRSRLRK |
3 | 250 | 257 | RRSRLRKQ |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KF754803 | 1e-124 | KF754803.1 Amborella trichopoda chromosome I mitochondrion, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020517980.1 | 0.0 | bZIP transcription factor 16 isoform X2 | ||||
TrEMBL | W1NEJ1 | 0.0 | W1NEJ1_AMBTC; Uncharacterized protein | ||||
STRING | ERM93836 | 0.0 | (Amborella trichopoda) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP700 | 17 | 67 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G35530.1 | 9e-25 | basic region/leucine zipper transcription factor 16 |
Link Out ? help Back to Top | |
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Phytozome | evm_27.model.AmTr_v1.0_scaffold00138.31 |
Publications ? help Back to Top | |||
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