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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | evm_27.model.AmTr_v1.0_scaffold00137.18 | ||||||||
Common Name | AMTR_s00137p00051070, LOC18421812 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
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Family | LBD | ||||||||
Protein Properties | Length: 132aa MW: 14330.5 Da PI: 8.0458 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 97.1 | 1.8e-30 | 2 | 104 | 1 | 98 |
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeA 65 +C++C+vlr++C+++C+l+ ++ ++q +++ +v+k+FG++ ++++++a+ e++r+d+++sl+yeA evm_27.model.AmTr_v1.0_scaffold00137.18 2 SCNGCRVLRKGCSESCMLRSCLqwiegTEAQGHATVFVAKFFGRAGLMSFISAVVENQRPDLFRSLLYEA 71 6*********************9999888999************************************** PP DUF260 66 earardPvyGavgvilklqqqleqlkaelallk 98 + r+ dPv+Gavg+++++++++++++++ +l++ evm_27.model.AmTr_v1.0_scaffold00137.18 72 CGRTVDPVNGAVGLLWSGNWHICEAAVQSVLRG 104 *************************99988765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 18.541 | 1 | 107 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 3.5E-26 | 2 | 100 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 132 aa Download sequence Send to blast |
MSCNGCRVLR KGCSESCMLR SCLQWIEGTE AQGHATVFVA KFFGRAGLMS FISAVVENQR 60 PDLFRSLLYE ACGRTVDPVN GAVGLLWSGN WHICEAAVQS VLRGDRIISD LDSQAKKKRS 120 ESPSSFVVEG I* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006826672.1 | 7e-93 | LOB domain-containing protein 39 | ||||
Swissprot | Q9SZE8 | 3e-61 | LBD39_ARATH; LOB domain-containing protein 39 | ||||
TrEMBL | W1NFC4 | 2e-91 | W1NFC4_AMBTC; Uncharacterized protein | ||||
STRING | ERM93909 | 3e-92 | (Amborella trichopoda) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP403 | 16 | 99 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37540.1 | 1e-63 | LOB domain-containing protein 39 |
Link Out ? help Back to Top | |
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Phytozome | evm_27.model.AmTr_v1.0_scaffold00137.18 |
Entrez Gene | 18421812 |
Publications ? help Back to Top | |||
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