PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

evm_27.model.AmTr_v1.0_scaffold00132.31

Common Name

AMTR_s00132p00118400, LOC18421359

Organism

Amborella trichopoda

Taxonomic ID

13333

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella

Family

HSF

Protein Properties

Length: 279aa MW: 31469.4 Da PI: 7.0107

Description

HSF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00132.31	genome	TAGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HSF_DNA-bind	113.8	1.1e-35	15	107	2	103
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBT CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekk 71 Fl+k+y++++d++++e++sw+e+g++fvv+ + efa+++Lp+yFkh+nf+SFvRQLn+YgF+k+ ++ evm_27.model.AmTr_v1.0_scaffold00132.31 15 FLSKTYQLVDDPATDEVVSWNEEGSTFVVWRPAEFARDLLPNYFKHNNFSSFVRQLNTYGFRKIVPDR-- 82 9***************************************************************99.. PP TTTXTTSEEEEESXXXXXXXXXXXXXXXXXXX CS HSF_DNA-bind 72 skskekiweFkhksFkkgkkellekikrkkse 103 weF+++ F++g+k ll++i+r+k + evm_27.model.AmTr_v1.0_scaffold00132.31 83 -------WEFSNDFFRRGEKALLCEIHRRKAS 107 .......********************976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.10	3.0E-38	4	99	IPR011991	Winged helix-turn-helix DNA-binding domain
SMART	SM00415	1.5E-58	11	104	IPR000232	Heat shock factor (HSF)-type, DNA-binding
SuperFamily	SSF46785	7.48E-34	12	104	IPR011991	Winged helix-turn-helix DNA-binding domain
PRINTS	PR00056	3.5E-21	15	38	IPR000232	Heat shock factor (HSF)-type, DNA-binding
Pfam	PF00447	3.2E-32	15	104	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	3.5E-21	53	65	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PROSITE pattern	PS00434	0	54	78	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	3.5E-21	66	78	IPR000232	Heat shock factor (HSF)-type, DNA-binding

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009408	Biological Process	response to heat
GO:0045892	Biological Process	negative regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 279 aa Download sequence Send to blast
MAKEIQQPRQ VPAPFLSKTY QLVDDPATDE VVSWNEEGST FVVWRPAEFA RDLLPNYFKH 60 NNFSSFVRQL NTYGFRKIVP DRWEFSNDFF RRGEKALLCE IHRRKASTVA ICSKSAAAVS 120 ASNSGDDQAS SSTSSTDPLP KNLHETSFSD LSDENEKLKR DNFHLASELL QTKKQCADLI 180 AFLSKCINVL PEQITKIMER GSNVDCGSYV KEGRDDDDEN DDQSPKLFGV RLRVKDEKNK 240 KRGFMGEGVN GPPLKVKKLD LETPWMRISS PEGSKVCH*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2ldu_A	1e-24	8	108	14	124	Heat shock factor protein 1
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Functional Description ? help Back to Top
Source	Description
UniProt	DNA-binding protein that specifically binds heat shock promoter elements (HSE) and activates transcription.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006826240.1	0.0	heat shock factor protein HSF24
Swissprot	P22335	5e-86	HSF24_SOLPE; Heat shock factor protein HSF24
TrEMBL	W1NDG4	0.0	W1NDG4_AMBTC; Uncharacterized protein
STRING	ERM93477	0.0	(Amborella trichopoda)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP96	17	233

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G36990.1	4e-69	heat shock factor 4

Link Out ? help Back to Top
Phytozome	evm_27.model.AmTr_v1.0_scaffold00132.31
Entrez Gene	18421359

Publications ? help Back to Top
Scharf KD, et al. Three tomato genes code for heat stress transcription factors with a region of remarkable homology to the DNA-binding domain of the yeast HSF. EMBO J., 1990. 9(13): p. 4495-501 [PMID:2148291] Amborella Genome Project The Amborella genome and the evolution of flowering plants. Science, 2013. 342(6165): p. 1241089 [PMID:24357323]