PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm_27.model.AmTr_v1.0_scaffold00132.31
Common NameAMTR_s00132p00118400, LOC18421359
Organism
Amborella trichopoda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
Family HSF
Protein Properties Length: 279aa    MW: 31469.4 Da    PI: 7.0107
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00132.31genomeTAGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind113.81.1e-35151072103
                                              HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBT CS
                             HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekk 71 
                                              Fl+k+y++++d++++e++sw+e+g++fvv+ + efa+++Lp+yFkh+nf+SFvRQLn+YgF+k+  ++  
  evm_27.model.AmTr_v1.0_scaffold00132.31  15 FLSKTYQLVDDPATDEVVSWNEEGSTFVVWRPAEFARDLLPNYFKHNNFSSFVRQLNTYGFRKIVPDR-- 82 
                                              9*****************************************************************99.. PP

                                              TTTXTTSEEEEESXXXXXXXXXXXXXXXXXXX CS
                             HSF_DNA-bind  72 skskekiweFkhksFkkgkkellekikrkkse 103
                                                     weF+++ F++g+k ll++i+r+k +
  evm_27.model.AmTr_v1.0_scaffold00132.31  83 -------WEFSNDFFRRGEKALLCEIHRRKAS 107
                                              .......**********************976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.103.0E-38499IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004151.5E-5811104IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467857.48E-3412104IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000563.5E-211538IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004473.2E-3215104IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.5E-215365IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043405478IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.5E-216678IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009408Biological Processresponse to heat
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 279 aa     Download sequence    Send to blast
MAKEIQQPRQ VPAPFLSKTY QLVDDPATDE VVSWNEEGST FVVWRPAEFA RDLLPNYFKH  60
NNFSSFVRQL NTYGFRKIVP DRWEFSNDFF RRGEKALLCE IHRRKASTVA ICSKSAAAVS  120
ASNSGDDQAS SSTSSTDPLP KNLHETSFSD LSDENEKLKR DNFHLASELL QTKKQCADLI  180
AFLSKCINVL PEQITKIMER GSNVDCGSYV KEGRDDDDEN DDQSPKLFGV RLRVKDEKNK  240
KRGFMGEGVN GPPLKVKKLD LETPWMRISS PEGSKVCH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A1e-24810814124Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtDNA-binding protein that specifically binds heat shock promoter elements (HSE) and activates transcription.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006826240.10.0heat shock factor protein HSF24
SwissprotP223355e-86HSF24_SOLPE; Heat shock factor protein HSF24
TrEMBLW1NDG40.0W1NDG4_AMBTC; Uncharacterized protein
STRINGERM934770.0(Amborella trichopoda)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP9617233
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36990.14e-69heat shock factor 4
Publications ? help Back to Top
  1. Scharf KD, et al.
    Three tomato genes code for heat stress transcription factors with a region of remarkable homology to the DNA-binding domain of the yeast HSF.
    EMBO J., 1990. 9(13): p. 4495-501
    [PMID:2148291]
  2. Amborella Genome Project
    The Amborella genome and the evolution of flowering plants.
    Science, 2013. 342(6165): p. 1241089
    [PMID:24357323]