PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm_27.model.AmTr_v1.0_scaffold00129.99
Common NameAMTR_s00129p00124210
Organism
Amborella trichopoda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
Family bHLH
Protein Properties Length: 514aa    MW: 54494 Da    PI: 5.6426
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00129.99genomeTAGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH35.91.3e-11324369555
                                              HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                                      HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                                              h+++Er RR++i +++ +L+el+P++      K +Ka++L + ++Y+k Lq
  evm_27.model.AmTr_v1.0_scaffold00129.99 324 HSIAERLRREKIAERMKNLQELVPNS-----NKTDKASMLDEIIDYVKFLQ 369
                                              99***********************7.....5******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000832.01E-12317373No hitNo description
SuperFamilySSF474598.11E-17317379IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.263319368IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.3E-16321378IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000107.0E-9324369IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.6E-13325374IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 514 aa     Download sequence    Send to blast
MMDDFLDQFL SSSSWSDLSS TTRSSWNGAA GQTNGLLADP VGLYVDGPKN PTTTVVNPSL  60
IIENLGNQRH AHEGTTENPN YGLNKGLFPV QNQPTREAQD LGSAQSEHNK EASDRTFPLQ  120
QALESNATSG SLGHQLNASG SVTPTCSSAQ YLPGVGGSNG VVGGLIEHGS GGTKGNETVG  180
FQQSIGDSLP INSAGALLRP SYGGVPLAPI MGQGKLEGFG LRNDYMEGDA NLLGKGYLGV  240
DKLPLLENIP ATSEQDEPCN SHLPSFATGP QIISPRTGGL PTHQQHGGNQ SISQLHPVAA  300
TGGGCNGGVR PRVRARRGQA TDPHSIAERL RREKIAERMK NLQELVPNSN KTDKASMLDE  360
IIDYVKFLQL QVKVLSMSRL GAAGAVVPLI TETEGSSNLL LSTSAGQAPD LSESQDNIAF  420
EQEVMKLMEC NMTSAMQYLQ NKGLCLMPIA LASAISNSGK QSPENKYSMA GIQPLSPGSD  480
NLIVENILER ERKELPNGAV IKQQEKQKPL QRI*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00659PBMTransfer from Pp3c14_15890Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011628588.10.0uncharacterized protein LOC18424008 isoform X2
TrEMBLW1NKT70.0W1NKT7_AMBTC; Uncharacterized protein
STRINGERM960810.0(Amborella trichopoda)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP5816313
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G30980.16e-56LJRHL1-like 2
Publications ? help Back to Top
  1. Amborella Genome Project
    The Amborella genome and the evolution of flowering plants.
    Science, 2013. 342(6165): p. 1241089
    [PMID:24357323]