PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm_27.model.AmTr_v1.0_scaffold00129.96
Common NameAMTR_s00129p00119770, LOC18424005
Organism
Amborella trichopoda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
Family ERF
Protein Properties Length: 304aa    MW: 33326.1 Da    PI: 4.533
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00129.96genomeTAGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2621.3e-1992141255
                                      AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                                               ++G+r+++ +g+W+AeIrdp   gk  r++lg+f taeeAa+a++a +++++g
  evm_27.model.AmTr_v1.0_scaffold00129.96  92 VFRGIRQRP-WGKWAAEIRDP---GKGVRVWLGTFNTAEEAARAYDAEARRIRG 141
                                              59*******.**********8...545*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.104.8E-3292150IPR001471AP2/ERF domain
PfamPF008473.0E-1292141IPR001471AP2/ERF domain
PROSITE profilePS5103223.31492149IPR001471AP2/ERF domain
SMARTSM003802.0E-3892155IPR001471AP2/ERF domain
SuperFamilySSF541716.15E-2292150IPR016177DNA-binding domain
PRINTSPR003672.5E-1193104IPR001471AP2/ERF domain
CDDcd000186.48E-3393151No hitNo description
PRINTSPR003672.5E-11115131IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009873Biological Processethylene-activated signaling pathway
GO:0034059Biological Processresponse to anoxia
GO:0071456Biological Processcellular response to hypoxia
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 304 aa     Download sequence    Send to blast
MCGGAIISDF IPTNRSRRIT RNQIKSPFID IDDDFEADFQ EFKDESDEGE EDIKPFAFPK  60
GGITEQGGYL KVPELKTSSL PERSAKRKRK NVFRGIRQRP WGKWAAEIRD PGKGVRVWLG  120
TFNTAEEAAR AYDAEARRIR GPKAKVNFPN DPVPHVPKKA KRSPPIAIGA SGPSDVVHIF  180
SDQGSNSFDC TDLSWDQNEV NEISSGLATC PEGSELASTD VDGGGLDLSC KVSAKSEGDM  240
NGNPAEKLSE ELSAFESYMK FFQIPYLEGV EERVPVADTC QDGGGSMDLW SFDDLPFIEG  300
TAF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A3e-2193149360ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00230DAPTransfer from AT1G72360Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006828662.10.0ethylene-responsive transcription factor ERF073
TrEMBLW1NKN90.0W1NKN9_AMBTC; Uncharacterized protein
STRINGERM960780.0(Amborella trichopoda)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72360.21e-32ERF family protein
Publications ? help Back to Top
  1. Amborella Genome Project
    The Amborella genome and the evolution of flowering plants.
    Science, 2013. 342(6165): p. 1241089
    [PMID:24357323]