PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | evm_27.model.AmTr_v1.0_scaffold00128.37 | ||||||||
Common Name | AMTR_s00128p00107690 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
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Family | LBD | ||||||||
Protein Properties | Length: 105aa MW: 12289.8 Da PI: 6.9732 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 35.5 | 2.8e-11 | 3 | 72 | 29 | 98 |
DUF260 29 kfanvhklFGasnvlkllkal.peeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallk 98 +f vh+l+G++++ ++l+ + ++++r + ++s +yeA+ar++ P +++i+ lq+q+++ + el++ + evm_27.model.AmTr_v1.0_scaffold00128.37 3 EFIKVHRLYGTHRMRQTLRPItEPTDRATSVESTIYEANARINHPGV-RMNMINMLQEQVKTFEYELNSER 72 7999***************9956777*******************76.689************99998766 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03195 | 2.6E-10 | 2 | 71 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 105 aa Download sequence Send to blast |
MDEFIKVHRL YGTHRMRQTL RPITEPTDRA TSVESTIYEA NARINHPGVR MNMINMLQEQ 60 VKTFEYELNS ERQIRESLAQ PPLEPPNRRE AFQEQLAHGT DNLR* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | W1NPZ8 | 8e-71 | W1NPZ8_AMBTC; Uncharacterized protein | ||||
STRING | ERM96844 | 1e-71 | (Amborella trichopoda) |
Link Out ? help Back to Top | |
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Phytozome | evm_27.model.AmTr_v1.0_scaffold00128.37 |
Publications ? help Back to Top | |||
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