PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm_27.model.AmTr_v1.0_scaffold00123.12
Common NameAMTR_s00123p00122830
Organism
Amborella trichopoda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
Family TALE
Protein Properties Length: 361aa    MW: 39582.3 Da    PI: 5.4784
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00123.12genomeTAGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox291.8e-092893222255
                                              SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS
                                 Homeobox  22 nrypsaeereeLAkklgLterqVkvWFqNrRake 55 
                                               +yps++++  LA+++gL+++q+ +WF N+R ++
  evm_27.model.AmTr_v1.0_scaffold00123.12 289 WPYPSESQKLALAESTGLDQKQINNWFINQRKRH 322
                                              69*****************************885 PP
2ELK34.73.8e-12242263122
                                      ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                                              ELK qLlrKYsgy gsLkqEF+
  evm_27.model.AmTr_v1.0_scaffold00123.12 242 ELKGQLLRKYSGYFGSLKQEFL 263
                                              9********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012556.4E-1889133IPR005540KNOX1
PfamPF037901.1E-2091128IPR005540KNOX1
SMARTSM012561.8E-19153204IPR005541KNOX2
PfamPF037911.1E-16159203IPR005541KNOX2
SMARTSM011889.5E-7242263IPR005539ELK domain
PfamPF037897.5E-10242263IPR005539ELK domain
PROSITE profilePS5121310.598242262IPR005539ELK domain
PROSITE profilePS5007112.649262325IPR001356Homeobox domain
SMARTSM003896.2E-13264329IPR001356Homeobox domain
SuperFamilySSF466895.99E-19264338IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.2E-27267327IPR009057Homeodomain-like
CDDcd000861.65E-11274326No hitNo description
PfamPF059208.5E-17282321IPR008422Homeobox KN domain
PROSITE patternPS000270300323IPR017970Homeobox, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009934Biological Processregulation of meristem structural organization
GO:0048440Biological Processcarpel development
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 361 aa     Download sequence    Send to blast
MEGQSSCLFG YSAMMGFGEN NNSSSNNSNN NDNRSNGGGG GGGGCFGGNA MMIVTPSSPP  60
VLQRPAHGEE ANNKDKKSND SCYMVEDETS MKAKIMAHPH FARLLNAYVN CQKVGAPPEV  120
VAQLEEVCVA AAAASKSSST TAAAAAAAAA AAARGGEEEE PALDQFMEAY SEMLTKYAQE  180
LTKPLEEAML FLSRIDSQFK ALTLTSPSPS SAFARTLERN GSSEDEVDAI DNGIDPLAED  240
RELKGQLLRK YSGYFGSLKQ EFLKKRKKGK LPKEARQQLL DWWGRHYKWP YPSESQKLAL  300
AESTGLDQKQ INNWFINQRK RHWKPSEEMQ FVVMDASQPT HYYMDDNLLH FPMDCTSTLL  360
*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1257266LKQEFLKKRK
2263267KKRKK
Functional Description ? help Back to Top
Source Description
UniProtMay have a role to play in formative events in ovule and embryo morphogenesis. Probably binds to the DNA sequence 5'-TGAC-3'.
UniProtPossible transcription activator involved in early embryonic development. Probably binds to the DNA sequence 5'-TGAC-3'.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006830099.30.0homeobox protein knotted-1-like LET6
SwissprotO222991e-121LET6_SOLLC; Homeobox protein knotted-1-like LET6
SwissprotP466081e-121HSBH1_SOYBN; Homeobox protein SBH1
TrEMBLW1NR950.0W1NR95_AMBTC; Uncharacterized protein
STRINGERM975150.0(Amborella trichopoda)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP16717148
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G62360.11e-107KNOX/ELK homeobox transcription factor
Publications ? help Back to Top
  1. Amborella Genome Project
    The Amborella genome and the evolution of flowering plants.
    Science, 2013. 342(6165): p. 1241089
    [PMID:24357323]
  2. Shu Y, et al.
    GmSBH1, a homeobox transcription factor gene, relates to growth and development and involves in response to high temperature and humidity stress in soybean.
    Plant Cell Rep., 2015. 34(11): p. 1927-37
    [PMID:26205508]