PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm_27.model.AmTr_v1.0_scaffold00121.5
Common NameAMTR_s00121p00026620, LOC18425704
Organism
Amborella trichopoda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
Family bHLH
Protein Properties Length: 460aa    MW: 50093.4 Da    PI: 5.3238
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00121.5genomeTAGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH40.64.5e-13283329455
                                             HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                                     HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                                             +h e+Er+RR+++N +f  Lr ++P+       K++Ka+ L  Av YI++L+
  evm_27.model.AmTr_v1.0_scaffold00121.5 283 NHVEAERQRREKLNRRFYALRAVVPHV-----SKMDKASLLADAVSYINQLK 329
                                             699***********************6.....5*****************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142156.7E-5124204IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088816.431279328IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.22E-17280342IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.57E-15282333No hitNo description
Gene3DG3DSA:4.10.280.101.2E-17283342IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.2E-10283328IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003538.1E-16285334IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 460 aa     Download sequence    Send to blast
MEPPTMAASS SLQQPWLTQQ QVPLQQSLHH LLNTRTEWWE YAIFWEASHD SLPQAPVLVW  60
GEGFFRGPTD GCNPSQMTKS EAQQMERKKV LRDLQAMMEV DPDGDGFSLD SDVSDLEWFY  120
MVSLTKSFMG AEGLPAHVFV AGRPIWLTGS HSIQSYNCER TKEAHLHGIQ SMACIPIANG  180
VLELGSMDLI PEDWSLLETF TSIFGSGQLQ RWGSDNPPPP SVPATEEGAV AVSSGPGWSG  240
VDSEHSDAED IAAAAAAAEA IAADRRPKKR GRKPGNGRVV PLNHVEAERQ RREKLNRRFY  300
ALRAVVPHVS KMDKASLLAD AVSYINQLKA KVQHLESALQ KLGSDEKTTQ KDSDGKLMPD  360
TSGSEGAEWN GIAELEVKIM GQDAIIRVQS ESTGHPAAKL MRALEELGLP VHHASVSNVK  420
GLMVQDVVVR VPEGSPCSDD ELKAALLRTG QLSRGPNSS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4rqw_A5e-36232048192Transcription factor MYC3
4rqw_B5e-36232048192Transcription factor MYC3
4rs9_A5e-36232048192Transcription factor MYC3
4yz6_A5e-36232048192Transcription factor MYC3
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1264272RRPKKRGRK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006830285.10.0transcription factor MYC2
TrEMBLW1NNW70.0W1NNW7_AMBTC; Uncharacterized protein
STRINGERM977010.0(Amborella trichopoda)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP8004717
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00870.12e-63bHLH family protein
Publications ? help Back to Top
  1. Amborella Genome Project
    The Amborella genome and the evolution of flowering plants.
    Science, 2013. 342(6165): p. 1241089
    [PMID:24357323]