PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | evm_27.model.AmTr_v1.0_scaffold00121.5 | ||||||||
Common Name | AMTR_s00121p00026620, LOC18425704 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
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Family | bHLH | ||||||||
Protein Properties | Length: 460aa MW: 50093.4 Da PI: 5.3238 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 40.6 | 4.5e-13 | 283 | 329 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h e+Er+RR+++N +f Lr ++P+ K++Ka+ L Av YI++L+ evm_27.model.AmTr_v1.0_scaffold00121.5 283 NHVEAERQRREKLNRRFYALRAVVPHV-----SKMDKASLLADAVSYINQLK 329 699***********************6.....5*****************95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF14215 | 6.7E-51 | 24 | 204 | IPR025610 | Transcription factor MYC/MYB N-terminal |
PROSITE profile | PS50888 | 16.431 | 279 | 328 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 2.22E-17 | 280 | 342 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 2.57E-15 | 282 | 333 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 1.2E-17 | 283 | 342 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.2E-10 | 283 | 328 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 8.1E-16 | 285 | 334 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 460 aa Download sequence Send to blast |
MEPPTMAASS SLQQPWLTQQ QVPLQQSLHH LLNTRTEWWE YAIFWEASHD SLPQAPVLVW 60 GEGFFRGPTD GCNPSQMTKS EAQQMERKKV LRDLQAMMEV DPDGDGFSLD SDVSDLEWFY 120 MVSLTKSFMG AEGLPAHVFV AGRPIWLTGS HSIQSYNCER TKEAHLHGIQ SMACIPIANG 180 VLELGSMDLI PEDWSLLETF TSIFGSGQLQ RWGSDNPPPP SVPATEEGAV AVSSGPGWSG 240 VDSEHSDAED IAAAAAAAEA IAADRRPKKR GRKPGNGRVV PLNHVEAERQ RREKLNRRFY 300 ALRAVVPHVS KMDKASLLAD AVSYINQLKA KVQHLESALQ KLGSDEKTTQ KDSDGKLMPD 360 TSGSEGAEWN GIAELEVKIM GQDAIIRVQS ESTGHPAAKL MRALEELGLP VHHASVSNVK 420 GLMVQDVVVR VPEGSPCSDD ELKAALLRTG QLSRGPNSS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4rqw_A | 5e-36 | 23 | 204 | 8 | 192 | Transcription factor MYC3 |
4rqw_B | 5e-36 | 23 | 204 | 8 | 192 | Transcription factor MYC3 |
4rs9_A | 5e-36 | 23 | 204 | 8 | 192 | Transcription factor MYC3 |
4yz6_A | 5e-36 | 23 | 204 | 8 | 192 | Transcription factor MYC3 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 264 | 272 | RRPKKRGRK |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006830285.1 | 0.0 | transcription factor MYC2 | ||||
TrEMBL | W1NNW7 | 0.0 | W1NNW7_AMBTC; Uncharacterized protein | ||||
STRING | ERM97701 | 0.0 | (Amborella trichopoda) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP8004 | 7 | 17 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G00870.1 | 2e-63 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | evm_27.model.AmTr_v1.0_scaffold00121.5 |
Entrez Gene | 18425704 |
Publications ? help Back to Top | |||
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