PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm_27.model.AmTr_v1.0_scaffold00119.82
Common NameAMTR_s00119p00105590
Organism
Amborella trichopoda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
Family MYB
Protein Properties Length: 402aa    MW: 45567.4 Da    PI: 9.2572
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00119.82genomeTAGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.13e-16138183147
                                              TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
                          Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                                              rg W + Ed +l+++v+q+G+ +W+ Ia+++  gR++k+c++rw++ 
  evm_27.model.AmTr_v1.0_scaffold00119.82 138 RGHWRPAEDAKLKELVAQFGPQNWNVIAERLE-GRSGKSCRLRWFNQ 183
                                              899*****************************.***********996 PP
2Myb_DNA-binding569.3e-18190233146
                                              TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
                          Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                                              r ++++eE+e+l+ a++++G++ W+ Iar ++ gRt++ +k++w+ 
  evm_27.model.AmTr_v1.0_scaffold00119.82 190 RRAFSEEEEERLLAAHRLYGNK-WAMIARLFP-GRTDNAVKNHWHV 233
                                              678*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.224133184IPR017930Myb domain
SMARTSM007176.2E-14137186IPR001005SANT/Myb domain
SuperFamilySSF466891.72E-27138231IPR009057Homeodomain-like
PfamPF002491.1E-15138183IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.2E-25139191IPR009057Homeodomain-like
CDDcd001672.35E-12141182No hitNo description
PROSITE profilePS5129426.912185239IPR017930Myb domain
SMARTSM007174.5E-15189237IPR001005SANT/Myb domain
PfamPF002492.6E-14190232IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.9E-20192238IPR009057Homeodomain-like
CDDcd001674.41E-7201232No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 402 aa     Download sequence    Send to blast
MSEPNPYSQK IRNGFSEIGF QGDFMGSLSY PHQRTSNSHS NSNSNSESYS KSPKALGLFS  60
SSSSGETQSK REMGFQVLSP AKQSKRKVLS FQSSMEDSER KGGTEDCYRD ERESHEEEPM  120
GNCGGKENED RHSKLCARGH WRPAEDAKLK ELVAQFGPQN WNVIAERLEG RSGKSCRLRW  180
FNQLDPRINR RAFSEEEEER LLAAHRLYGN KWAMIARLFP GRTDNAVKNH WHVIMARKYR  240
EQSNAYRRRK SLPQQQQPTM QRKVETSNGR GASDSSILSN RDESASTCTD LSLNSSNSRA  300
FPGFYSRFGT LQHQGEEEKN KALGNGTMEK SEGPTNGFYF SLPPPPQMVL LKQSDSEFLQ  360
TSSMVGESRR ERDHQFVYGE INHKSEKMNL LFIDFLGVGA T*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A8e-311382387107B-MYB
1h88_C2e-3013823858158MYB PROTO-ONCOGENE PROTEIN
1h89_C2e-3013823858158MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006829839.30.0myb-like protein AA
TrEMBLW1NQ620.0W1NQ62_AMBTC; Uncharacterized protein
STRINGERM972550.0(Amborella trichopoda)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69560.17e-70myb domain protein 105
Publications ? help Back to Top
  1. Amborella Genome Project
    The Amborella genome and the evolution of flowering plants.
    Science, 2013. 342(6165): p. 1241089
    [PMID:24357323]