PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm_27.model.AmTr_v1.0_scaffold00119.25
Common NameAMTR_s00119p00045570
Organism
Amborella trichopoda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
Family NAC
Protein Properties Length: 401aa    MW: 45082.8 Da    PI: 8.1962
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00119.25genomeTAGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM177.53.5e-55201471129
                                      NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyat 70 
                                              lppGfrFhPtdeel++ yL +kv + ++++ ++i e+d++k+ePwdLp k+k +ekewy F+ rd+ky+t
  evm_27.model.AmTr_v1.0_scaffold00119.25  20 LPPGFRFHPTDEELITSYLIEKVMNGSFTA-RAIGEADLNKCEPWDLPWKAKMGEKEWYVFCLRDRKYPT 88 
                                              79*************************999.89***************888999**************** PP

                                      NAM  71 gkrknratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrle 129
                                              g r+nrat++gyWkatgkdke+++ +++lvg+kktLvfykgrapkgekt+Wvmheyrle
  evm_27.model.AmTr_v1.0_scaffold00119.25  89 GLRTNRATEAGYWKATGKDKEIYKGRKTLVGMKKTLVFYKGRAPKGEKTNWVMHEYRLE 147
                                              ************************9999*****************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.62E-6215172IPR003441NAC domain
PROSITE profilePS5100556.77620172IPR003441NAC domain
PfamPF023656.8E-2821146IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 401 aa     Download sequence    Send to blast
MGAIIEQVSM IRKGEEYMDL PPGFRFHPTD EELITSYLIE KVMNGSFTAR AIGEADLNKC  60
EPWDLPWKAK MGEKEWYVFC LRDRKYPTGL RTNRATEAGY WKATGKDKEI YKGRKTLVGM  120
KKTLVFYKGR APKGEKTNWV MHEYRLEGKY SYNNLSRTTT KDEWVVSRIF HKSSAGKRAP  180
FSGLLRINSF GDELRSPSLP PLMDSSVTNA SSSLMDDGIR ERVDMPSFST SLEEQNDQLM  240
SFGLNRYGGL GPGGVNPGAT SHNPAYHPHF SRFNSLYPYQ TPSGFNTMNH PRNNQAPLYL  300
HSSLDTSDRA MLRTVADGHG AKRFKVEQER GSSLLQEPPR CVVSNQSMVS ISQDTGMSTD  360
VNTEISSVVS KHEFCSRPFE DLEALSSSAG PVDLDCLWNY *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A4e-511817815171NO APICAL MERISTEM PROTEIN
1ut4_B4e-511817815171NO APICAL MERISTEM PROTEIN
1ut7_A4e-511817815171NO APICAL MERISTEM PROTEIN
1ut7_B4e-511817815171NO APICAL MERISTEM PROTEIN
3swm_A5e-511817818174NAC domain-containing protein 19
3swm_B5e-511817818174NAC domain-containing protein 19
3swm_C5e-511817818174NAC domain-containing protein 19
3swm_D5e-511817818174NAC domain-containing protein 19
3swp_A5e-511817818174NAC domain-containing protein 19
3swp_B5e-511817818174NAC domain-containing protein 19
3swp_C5e-511817818174NAC domain-containing protein 19
3swp_D5e-511817818174NAC domain-containing protein 19
4dul_A4e-511817815171NAC domain-containing protein 19
4dul_B4e-511817815171NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtBinds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269|PubMed:27021284}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by the microRNA miR164. {ECO:0000269|PubMed:15294871, ECO:0000269|PubMed:17098808}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006829782.30.0NAC domain-containing protein 100
RefseqXP_020517567.10.0NAC domain-containing protein 100
RefseqXP_020517568.10.0NAC domain-containing protein 100
SwissprotQ9FLJ21e-118NC100_ARATH; NAC domain-containing protein 100
TrEMBLW1NNG40.0W1NNG4_AMBTC; Uncharacterized protein
STRINGERM971980.0(Amborella trichopoda)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP1715800
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G61430.11e-120NAC domain containing protein 100
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Amborella Genome Project
    The Amborella genome and the evolution of flowering plants.
    Science, 2013. 342(6165): p. 1241089
    [PMID:24357323]