PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm_27.model.AmTr_v1.0_scaffold00119.21
Common NameAMTR_s00119p00040230, LOC18425147
Organism
Amborella trichopoda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
Family NAC
Protein Properties Length: 358aa    MW: 40894 Da    PI: 9.1023
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00119.21genomeTAGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM171.33e-5351421128
                                      NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyat 70 
                                              lppGfrFhPtdeel+ +yL+++++++++++ ++i+evdiyk++PwdLp+k++ +e+ewyfFs+rd+ky++
  evm_27.model.AmTr_v1.0_scaffold00119.21   5 LPPGFRFHPTDEELILHYLRNRAASNPCPV-SIIAEVDIYKFDPWDLPAKAAFGEREWYFFSPRDRKYPN 73 
                                              79****************************.89***************988899**************** PP

                                      NAM  71 gkrknratksgyWkatgkdkevlsk......kgel.......vglkktLvfykgrapkgektdWvmheyr 127
                                              g+r+nra++sgyWkatg+dk+++++      +  +       +g+kk Lvfykgr pkg kt+W+mheyr
  evm_27.model.AmTr_v1.0_scaffold00119.21  74 GERPNRAAASGYWKATGTDKPIVRSssnnnnN--HnnegkaiIGVKKALVFYKGRPPKGIKTNWIMHEYR 141
                                              ***********************996665550..05566666***************************9 PP

                                      NAM 128 l 128
                                              l
  evm_27.model.AmTr_v1.0_scaffold00119.21 142 L 142
                                              8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.01E-633171IPR003441NAC domain
PROSITE profilePS5100560.6835171IPR003441NAC domain
PfamPF023653.4E-276142IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009825Biological Processmultidimensional cell growth
GO:0009835Biological Processfruit ripening
GO:0009908Biological Processflower development
GO:0010150Biological Processleaf senescence
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 358 aa     Download sequence    Send to blast
MAKNLPPGFR FHPTDEELIL HYLRNRAASN PCPVSIIAEV DIYKFDPWDL PAKAAFGERE  60
WYFFSPRDRK YPNGERPNRA AASGYWKATG TDKPIVRSSS NNNNNHNNEG KAIIGVKKAL  120
VFYKGRPPKG IKTNWIMHEY RLNDPKSRPS ILKLKGSMRL DEWVLCRIYK KSYQMQEKNM  180
IEPEHQEEEP TLEDVLSSLP SITSQPSLKI PRSASFTQFL ETVDQSMLSR LIFGTTNDSS  240
EESEPTNPIN NSKNHHHSNI DISNSNNKYQ SPLETSSLAT APQPEIEQKR PYSMMANGPN  300
DGFLPSKRPN LSMNNTNFKE HLLVPQYQFH SSGAPYQLSQ QTFFNNHILL NPLLEFQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A2e-71417716171NO APICAL MERISTEM PROTEIN
1ut4_B2e-71417716171NO APICAL MERISTEM PROTEIN
1ut7_A2e-71417716171NO APICAL MERISTEM PROTEIN
1ut7_B2e-71417716171NO APICAL MERISTEM PROTEIN
3swm_A3e-71417719174NAC domain-containing protein 19
3swm_B3e-71417719174NAC domain-containing protein 19
3swm_C3e-71417719174NAC domain-containing protein 19
3swm_D3e-71417719174NAC domain-containing protein 19
3swp_A3e-71417719174NAC domain-containing protein 19
3swp_B3e-71417719174NAC domain-containing protein 19
3swp_C3e-71417719174NAC domain-containing protein 19
3swp_D3e-71417719174NAC domain-containing protein 19
4dul_A2e-71417716171NAC domain-containing protein 19
4dul_B2e-71417716171NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds DNA motifs 5'-CGT[AG](5N)NACG[ACT][AC][AT][ACG][ACT]-3' and 5'-CACG[ACT][AC][AT][AGT][CT]-3' in target genes promoters. Promotes leaf senescence (developmental, light-induced and ABA-induced senescence) and regulates fruit yield and sugar content, probably by establishing abscisic acid (ABA) homeostasis. Activates the expression of senescence and ABA associated genes including NCED1, ABCG40, CYP707A2, SAG113, SGR1 and PAO, by directly binding to their promoters. {ECO:0000269|PubMed:29760199}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00221DAPTransfer from AT1G69490Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Accumulates during age-dependent and dark-induced leaf senescence. Induced by abscisic acid (ABA). {ECO:0000269|PubMed:29760199}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006829778.10.0NAC transcription factor 29
SwissprotK4BNG75e-91NAP2_SOLLC; NAC domain-containing protein 2
TrEMBLW1NQU50.0W1NQU5_AMBTC; Uncharacterized protein
STRINGERM971940.0(Amborella trichopoda)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP1715800
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69490.13e-87NAC-like, activated by AP3/PI
Publications ? help Back to Top
  1. Tomato Genome Consortium
    The tomato genome sequence provides insights into fleshy fruit evolution.
    Nature, 2012. 485(7400): p. 635-41
    [PMID:22660326]
  2. Amborella Genome Project
    The Amborella genome and the evolution of flowering plants.
    Science, 2013. 342(6165): p. 1241089
    [PMID:24357323]
  3. Ma X, et al.
    The NAC Transcription Factor SlNAP2 Regulates Leaf Senescence and Fruit Yield in Tomato.
    Plant Physiol., 2018. 177(3): p. 1286-1302
    [PMID:29760199]