PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm_27.model.AmTr_v1.0_scaffold00119.12
Common NameAMTR_s00119p00026870, LOC18425138
Organism
Amborella trichopoda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
Family NAC
Protein Properties Length: 315aa    MW: 35682.6 Da    PI: 6.9262
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00119.12genomeTAGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM161.14.4e-50151451128
                                      NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyat 70 
                                              lppGfrF Ptdeelv +yL+kk+++ +l++  +i+evd+yk++Pw+Lp+k+  ++kewyfF++rd+ky++
  evm_27.model.AmTr_v1.0_scaffold00119.12  15 LPPGFRFFPTDEELVLHYLCKKITHLPLPV-PIIAEVDLYKYDPWQLPEKALFGDKEWYFFTPRDRKYPN 83 
                                              79****************************.88***************888889**************** PP

                                      NAM  71 gkrknratksgyWkatgkdkevlsk....kgelvglkktLvfykgrapkgektdWvmheyrl 128
                                              g+r+nra+ +gyWkatg dk +  +    ++ + g+kk Lvfy+g+apkg+kt+W+mheyrl
  evm_27.model.AmTr_v1.0_scaffold00119.12  84 GSRPNRAAGTGYWKATGADKLLRPQtssnRQCVLGIKKALVFYEGKAPKGQKTNWIMHEYRL 145
                                              *******************998887655455569**************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.62E-6210175IPR003441NAC domain
PROSITE profilePS5100558.99115175IPR003441NAC domain
PfamPF023654.6E-2616145IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 315 aa     Download sequence    Send to blast
MAGVAGRNAT TELNLPPGFR FFPTDEELVL HYLCKKITHL PLPVPIIAEV DLYKYDPWQL  60
PEKALFGDKE WYFFTPRDRK YPNGSRPNRA AGTGYWKATG ADKLLRPQTS SNRQCVLGIK  120
KALVFYEGKA PKGQKTNWIM HEYRLANRPS TPTTNYKKGT SLRLDEWVLC RLYNKKNNYK  180
KMLEQTEEES LAETMDSLEA IDEKQLPLRD SFTNADSHIF RCDIVGESLP DMVDLSPQPA  240
FGFGGEATAR VMMKPPPPPS TGGGERGIVD WVSPFLGFDD LQYTFPPLGE ITNTNSTNND  300
YYFSAYYPKD LILI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A2e-8171817174Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in stress response. {ECO:0000250|UniProtKB:Q7F2L3}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salt stress (PubMed:18813954, PubMed:20632034). Induced by dehydration, cold stress and methyl jasmonate (PubMed:20632034). {ECO:0000269|PubMed:18813954, ECO:0000269|PubMed:20632034}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006829769.10.0NAC transcription factor 32
SwissprotQ52QH42e-91NAC68_ORYSJ; NAC domain-containing protein 68
TrEMBLW1NQ040.0W1NQ04_AMBTC; Uncharacterized protein
STRINGERM971850.0(Amborella trichopoda)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP1715800
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G63790.18e-77NAC domain containing protein 102
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Taga Y, et al.
    Role of OsHSP90 and IREN, Ca2+ dependent nuclease, in plant hypersensitive cell death induced by transcription factor OsNAC4.
    Plant Signal Behav, 2009. 4(8): p. 740-2
    [PMID:19820348]
  3. Xia N, et al.
    Characterization of a novel wheat NAC transcription factor gene involved in defense response against stripe rust pathogen infection and abiotic stresses.
    Mol. Biol. Rep., 2010. 37(8): p. 3703-12
    [PMID:20213512]
  4. Takasaki H, et al.
    The abiotic stress-responsive NAC-type transcription factor OsNAC5 regulates stress-inducible genes and stress tolerance in rice.
    Mol. Genet. Genomics, 2010. 284(3): p. 173-83
    [PMID:20632034]
  5. Nakayama A, et al.
    Genome-wide identification of WRKY45-regulated genes that mediate benzothiadiazole-induced defense responses in rice.
    BMC Plant Biol., 2013. 13: p. 150
    [PMID:24093634]
  6. Amborella Genome Project
    The Amborella genome and the evolution of flowering plants.
    Science, 2013. 342(6165): p. 1241089
    [PMID:24357323]
  7. Ootsubo Y,Hibino T,Wakazono T,Mukai Y,Che FS
    IREN, a novel EF-hand motif-containing nuclease, functions in the degradation of nuclear DNA during the hypersensitive response cell death in rice.
    Biosci. Biotechnol. Biochem., 2016. 80(4): p. 748-60
    [PMID:26766411]