PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm_27.model.AmTr_v1.0_scaffold00118.25
Common NameAMTR_s00118p00114180
Organism
Amborella trichopoda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
Family C2H2
Protein Properties Length: 326aa    MW: 36896.5 Da    PI: 6.3898
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00118.25genomeTAGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.74.3e-056185123
                                             EEET..TTTEEESSHHHHHHHHHHT CS
                                  zf-C2H2  1 ykCp..dCgksFsrksnLkrHirtH 23
                                             y+C+   Cg+ F ++s LkrH   H
  evm_27.model.AmTr_v1.0_scaffold00118.25 61 YVCHydGCGRKFLDSSKLKRHFLIH 85
                                             9********************8877 PP
2zf-C2H222.92.2e-0791115123
                                              EEET..TTTEEESSHHHHHHHHHHT CS
                                  zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                                              y+Cp   Cgk Fs   nL+ H+rtH
  evm_27.model.AmTr_v1.0_scaffold00118.25  91 YTCPheGCGKAFSLDFNLRAHMRTH 115
                                              99**********************9 PP
3zf-C2H218.94.2e-06121145123
                                              EEET..TTTEEESSHHHHHHHHHHT CS
                                  zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                                              + Cp  dCgk++ + + Lk Hi++H
  evm_27.model.AmTr_v1.0_scaffold00118.25 121 HICPygDCGKRYAHEYKLKAHIKSH 145
                                              68**********************6 PP
4zf-C2H2157e-05183208123
                                              EEET..TTTEEESSHHHHHHHHHH.T CS
                                  zf-C2H2   1 ykCp..dCgksFsrksnLkrHirt.H 23 
                                              y+Cp   C+k + + + L+ H+++ H
  evm_27.model.AmTr_v1.0_scaffold00118.25 183 YSCPyeGCDKAYIHEYKLNLHLKReH 208
                                              99*********************999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.604.7E-122857IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.4923261IPR007087Zinc finger, C2H2
SMARTSM003550.00933256IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002803456IPR007087Zinc finger, C2H2
SuperFamilySSF576672.18E-73585No hitNo description
Gene3DG3DSA:3.30.160.601.7E-135880IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015714.5446190IPR007087Zinc finger, C2H2
SMARTSM003550.00336185IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002806385IPR007087Zinc finger, C2H2
SuperFamilySSF576674.42E-1672125No hitNo description
Gene3DG3DSA:3.30.160.605.5E-2181114IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015713.27791120IPR007087Zinc finger, C2H2
SMARTSM003551.4E-491115IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028093115IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.604.6E-11115147IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576678.91E-5115148No hitNo description
PROSITE profilePS501579.743121150IPR007087Zinc finger, C2H2
SMARTSM003550.0023121145IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280123146IPR007087Zinc finger, C2H2
SuperFamilySSF576672.39E-5178206No hitNo description
Gene3DG3DSA:3.30.160.608.0E-8178205IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS501579.972183213IPR007087Zinc finger, C2H2
SMARTSM003550.0041183208IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280185208IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 326 aa     Download sequence    Send to blast
MRGEDTLKAL KERYKEPEPV EPEPEPRTEV LYLCTYEGCG KTFVDAGAIR KHSHIHGERQ  60
YVCHYDGCGR KFLDSSKLKR HFLIHTGDRP YTCPHEGCGK AFSLDFNLRA HMRTHSQENY  120
HICPYGDCGK RYAHEYKLKA HIKSHHEKNL STDVKHTPQA EKPHNTPKTP ALVYGSASSD  180
RPYSCPYEGC DKAYIHEYKL NLHLKREHPG HNSEENGKHN VDAENEADEG SDPDAYNALK  240
SGNGKSSKRS KVKLASKAPA AKTTQRKGMG TVTLNTNPVA KPWTSKGFVD EEDSEETEED  300
RDNGEEEGWQ YGEANEDDEE TEYED*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ubd_C6e-37251452117PROTEIN (YY1 ZINC FINGER DOMAIN)
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtDual-function transcription factor with both repression and activation activities. Binds to 5'-CCATATT-3' motif in target gene promoters (e.g. ABR1) (PubMed:26961720). Binds also to G-rich DNA motif 5'-GGGGGCAGTGG-3' (PubMed:22508367). Regulates the expression of genes involved in diverse cellular pathways, including glucose metabolism, photosynthesis, phototropism and stress response (e.g. salt, drought and osmotic stress) (PubMed:22508367, PubMed:26961720). Regulates plant immunity, especially during necrotrophic fungal infection (e.g. B.cinerea) (PubMed:24451981). Binds to ABR1 promoter and promotes its expression, thus negatively regulating the abscisic acid (ABA) signaling pathway. Represses ABA- and salt-responsive genes expression (PubMed:26961720). {ECO:0000269|PubMed:22508367, ECO:0000269|PubMed:24451981, ECO:0000269|PubMed:26961720}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by abscisic acid (ABA) in an ABI1- and ABI4-dependent manner. Stimulated by stress conditions including high salt, osmotic stress (e.g. mannitol) and dehydration. May be induced by ABI4 but repressed by ABR1. Repressed by darkness but induced by light. {ECO:0000269|PubMed:26961720}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011629428.10.0uncharacterized zinc finger protein At4g06634 isoform X4
SwissprotQ2V3L31e-110YY1_ARATH; Zinc finger transcription factor YY1
TrEMBLW1NQS90.0W1NQS9_AMBTC; Uncharacterized protein
STRINGERM978430.0(Amborella trichopoda)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP38561626
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G06634.21e-108C2H2 family protein
Publications ? help Back to Top
  1. Kumekawa N,Hosouchi T,Tsuruoka H,Kotani H
    The size and sequence organization of the centromeric region of Arabidopsis thaliana chromosome 4.
    DNA Res., 2001. 8(6): p. 285-90
    [PMID:11853315]
  2. Amborella Genome Project
    The Amborella genome and the evolution of flowering plants.
    Science, 2013. 342(6165): p. 1241089
    [PMID:24357323]
  3. Li T,Wu XY,Li H,Song JH,Liu JY
    A Dual-Function Transcription Factor, AtYY1, Is a Novel Negative Regulator of the Arabidopsis ABA Response Network.
    Mol Plant, 2016. 9(5): p. 650-661
    [PMID:26961720]
  4. Wu XY,Li T
    A Casein Kinase II Phosphorylation Site in AtYY1 Affects Its Activity, Stability, and Function in the ABA Response.
    Front Plant Sci, 2017. 8: p. 323
    [PMID:28348572]