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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | evm_27.model.AmTr_v1.0_scaffold00117.3 | ||||||||
Common Name | AMTR_s00117p00021640 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
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Family | C2H2 | ||||||||
Protein Properties | Length: 220aa MW: 24859.1 Da PI: 10.182 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 11.7 | 0.00079 | 110 | 131 | 2 | 23 |
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 +C C+k F + +L H+r H evm_27.model.AmTr_v1.0_scaffold00117.3 110 VCAMCKKKFHSMKSLFGHMRWH 131 6*******************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 4.48E-7 | 43 | 65 | No hit | No description |
SMART | SM00355 | 0.13 | 43 | 65 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 45 | 65 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 4.48E-7 | 104 | 131 | No hit | No description |
SMART | SM00355 | 11 | 109 | 131 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 111 | 131 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 220 aa Download sequence Send to blast |
MKPSISDFQI PLALRPNQFP LMETNRPQVA SQFDQLAGVL GNYSCKLCNL KCGSKRSLGA 60 HVKAHASNYG FTDSDKIGLK DERERRKEGC RGERKSTTEE TTKHNQQEPV CAMCKKKFHS 120 MKSLFGHMRW HPERDWRGIQ PPEKPILAGK NERNLQVKNS SNGAQMNSVE SLSYHTNSTI 180 TEESSKEHYP LSPLSNWSVI VSGTRRNKTA RSESKDLQR* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020520295.1 | 1e-115 | uncharacterized protein LOC18429707 | ||||
TrEMBL | W1NQZ9 | 1e-164 | W1NQZ9_AMBTC; Uncharacterized protein | ||||
STRING | ERM97933 | 1e-164 | (Amborella trichopoda) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP7061 | 3 | 8 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G17180.1 | 4e-11 | C2H2-like zinc finger protein |
Link Out ? help Back to Top | |
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Phytozome | evm_27.model.AmTr_v1.0_scaffold00117.3 |
Publications ? help Back to Top | |||
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