PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm_27.model.AmTr_v1.0_scaffold00115.20
Common NameAMTR_s00115p00126760, LOC18425865
Organism
Amborella trichopoda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
Family C3H
Protein Properties Length: 539aa    MW: 58303.9 Da    PI: 7.9577
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00115.20genomeTAGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH34.53.5e-11168193227
                                              -S---SGGGGTS--TTTTT-SS-SSS CS
                                  zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                                              +++ C +++ t tCk+Gd+CkF H++
  evm_27.model.AmTr_v1.0_scaffold00115.20 168 GEKDCTYYMLTRTCKFGDSCKFDHPF 193
                                              7889********************95 PP
2zf-CCCH33.38.3e-11219245127
                                              --S---SGGGGTS--TTTTT-SS-SSS CS
                                  zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                                              ++++ C++f++t  Ck+G rCkF+H++
  evm_27.model.AmTr_v1.0_scaffold00115.20 219 PGEPDCPYFMKTQKCKFGQRCKFNHPK 245
                                              5789*********************96 PP
3zf-CCCH41.42.3e-13274298327
                                              S---SGGGGTS--TTTTT-SS-SSS CS
                                  zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                                              +++C f+++tG+Ck+G++CkF+H++
  evm_27.model.AmTr_v1.0_scaffold00115.20 274 EPECTFYMKTGICKFGASCKFHHPK 298
                                              799********************96 PP
4zf-CCCH40.64.1e-13352377126
                                              --S---SGGGGTS--TTTTT-SS-SS CS
                                  zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                                              ++++ C+f+++tG CkyG++C+F+H+
  evm_27.model.AmTr_v1.0_scaffold00115.20 352 PGEVDCPFYLKTGSCKYGATCRFNHP 377
                                              57899********************9 PP
5zf-CCCH37.92.9e-12434455526
                                              --SGGGGTS--TTTTT-SS-SS CS
                                  zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                                               C++++++G+Ck+G+rCkF+H+
  evm_27.model.AmTr_v1.0_scaffold00115.20 434 ACDYYMKFGECKFGERCKFHHP 455
                                              7********************9 PP
6zf-CCCH35.71.4e-11486511227
                                              -S---SGGGGTS--TTTTT-SS-SSS CS
                                  zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                                              +++ C+f+++t tCkyG+ CkF H+p
  evm_27.model.AmTr_v1.0_scaffold00115.20 486 GEAVCPFYMKTATCKYGAVCKFDHPP 511
                                              5789********************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010313.563166194IPR000571Zinc finger, CCCH-type
SMARTSM003563.4E-4166193IPR000571Zinc finger, CCCH-type
PfamPF006427.6E-9168193IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.79E-5168193IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.671218246IPR000571Zinc finger, CCCH-type
SMARTSM003565.5E-5218245IPR000571Zinc finger, CCCH-type
PfamPF006421.9E-8220245IPR000571Zinc finger, CCCH-type
SuperFamilySSF902299.03E-6223248IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.4E-4224244IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.347271299IPR000571Zinc finger, CCCH-type
SMARTSM003568.8E-7271298IPR000571Zinc finger, CCCH-type
PfamPF006429.4E-11274298IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.88E-6275299IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.4E-5277298IPR000571Zinc finger, CCCH-type
SMARTSM003562.9E-7351378IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.131351379IPR000571Zinc finger, CCCH-type
PfamPF006421.6E-10353377IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.09E-5355378IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.0E-5357376IPR000571Zinc finger, CCCH-type
SMARTSM003561.7E-6429456IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.413429457IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.88E-6432458IPR000571Zinc finger, CCCH-type
PfamPF006421.7E-9434455IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.0E-4435455IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.479484512IPR000571Zinc finger, CCCH-type
SMARTSM003561.9E-5484511IPR000571Zinc finger, CCCH-type
PfamPF006421.4E-8486511IPR000571Zinc finger, CCCH-type
SuperFamilySSF902298.77E-5488511IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.7E-4489509IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 539 aa     Download sequence    Send to blast
MANQTYSSYG GSSLSSLYSS RLSTNYIADP YSSDASLLGS NRYMGTDTIT GSDPSRYSLD  60
KGSAFLNQSD SLRFSGTDTF TASRLSGASL YTQPSRVGGE TLGILPNSSV DHSVAGLKRP  120
TEALYHQNVL GTYNTIGQSD SMYSTNSLVK RPRIESASNL PVYPQRPGEK DCTYYMLTRT  180
CKFGDSCKFD HPFWVPEGGI PDWKEVPLIP VSDMLPERPG EPDCPYFMKT QKCKFGQRCK  240
FNHPKDKVEA SNVSPSVGNT DGAIITALPE RPSEPECTFY MKTGICKFGA SCKFHHPKDR  300
PVPLTGTDSV TGEQTGSVKV DGAVVGADQQ VKPFTPFTPA LLHNSKGLPI RPGEVDCPFY  360
LKTGSCKYGA TCRFNHPDWR TTTTPAAVIN PLAATLPLGV VNTPPPALSH DPWMAQTTLG  420
LGVSVYPQRP GQIACDYYMK FGECKFGERC KFHHPLDRTA PTAAVAQQVP QQVVKLTLAG  480
LPRREGEAVC PFYMKTATCK YGAVCKFDHP PPGEVAAKAV GGAATDSKIA EGEQVKDE*
Functional Description ? help Back to Top
Source Description
UniProtInvolved in flower development (PubMed:11595801, PubMed:12530963). Functions in floral reproductive organ identity by binding AGAMOUS (AG) pre-mRNA and promoting its processing. Functions in association with HUA2 and HEN4 (PubMed:12530963). {ECO:0000269|PubMed:11595801, ECO:0000269|PubMed:12530963}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006830468.10.0zinc finger CCCH domain-containing protein 37
SwissprotQ941Q31e-173C3H37_ARATH; Zinc finger CCCH domain-containing protein 37
TrEMBLW1NSN30.0W1NSN3_AMBTC; Uncharacterized protein
STRINGERM978840.0(Amborella trichopoda)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP67541519
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12680.11e-163floral homeotic protein (HUA1)
Publications ? help Back to Top
  1. Amborella Genome Project
    The Amborella genome and the evolution of flowering plants.
    Science, 2013. 342(6165): p. 1241089
    [PMID:24357323]