PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm_27.model.AmTr_v1.0_scaffold00114.41
Common NameAMTR_s00114p00100630
Organism
Amborella trichopoda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
Family C2H2
Protein Properties Length: 183aa    MW: 20592.3 Da    PI: 5.371
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00114.41genomeTAGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.90.00032165181117
                                              EEETTTTEEESSHHHHH CS
                                  zf-C2H2   1 ykCpdCgksFsrksnLk 17 
                                              ++C+ C+k+F+r  n++
  evm_27.model.AmTr_v1.0_scaffold00114.41 165 FSCSVCNKTFNRYNNMQ 181
                                              89*********988765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.603.2E-4165180IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
Sequence ? help Back to Top
Protein Sequence    Length: 183 aa     Download sequence    Send to blast
MGMKKNQADG FGLCYQVPTF TEWLKPSGVE SQAISTVHSS SSSSSYDFHC LQIPLSYQYQ  60
QEKKMKCLPL ISEFPESRSV KEEVVDAVLE RERFDFGKEE RDKVTVALQI GLPNSGPSSS  120
SLTDLKDEFS KEKKGVDREE REVLISEGKF WIPTPAQILI GPTQFSCSVC NKTFNRYNNM  180
QV*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006836068.21e-130zinc finger protein WIP6
TrEMBLW1NPV41e-132W1NPV4_AMBTC; Uncharacterized protein
STRINGERM989211e-133(Amborella trichopoda)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP4101597
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08290.13e-20WIP domain protein 3
Publications ? help Back to Top
  1. Amborella Genome Project
    The Amborella genome and the evolution of flowering plants.
    Science, 2013. 342(6165): p. 1241089
    [PMID:24357323]