PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm_27.model.AmTr_v1.0_scaffold00111.25
Common NameAMTR_s00111p00051610, LOC18428204
Organism
Amborella trichopoda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
Family ERF
Protein Properties Length: 363aa    MW: 38745.8 Da    PI: 4.5568
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00111.25genomeTAGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.92.5e-1882132155
                                      AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                                              + y+GVr +  +grWv+eIr+p++   + r++lg+f t+e+Aa+a++ a++ ++g
  evm_27.model.AmTr_v1.0_scaffold00111.25  82 PVYRGVRMRN-WGRWVSEIREPRK---KSRIWLGTFPTPEMAARAHDVAALTIKG 132
                                              68*****998.**********843...6**********************99887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008477.9E-1382132IPR001471AP2/ERF domain
SMARTSM003802.6E-3683146IPR001471AP2/ERF domain
PROSITE profilePS5103223.53883140IPR001471AP2/ERF domain
SuperFamilySSF541712.62E-2183141IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.102.7E-3183141IPR001471AP2/ERF domain
CDDcd000184.19E-3284142No hitNo description
PRINTSPR003679.4E-108495IPR001471AP2/ERF domain
PRINTSPR003679.4E-10106122IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 363 aa     Download sequence    Send to blast
MAPLPSSKSE LTPSSSLSSS TTTTTTTTTS SSSSASASSS PKTLEFSQNS KISTSAPTSE  60
AADSDEPSKK SRRTNADGGK HPVYRGVRMR NWGRWVSEIR EPRKKSRIWL GTFPTPEMAA  120
RAHDVAALTI KGRSAFLNFP ELAAELPRPA SASPRDIQAA AAKAASSSFP VSPSKALNSS  180
GMLASSPENS TVENTIRFEE NSTGSMENIH NAASRVAQIL DEEEAIFMGL PDIPSSPDNV  240
VISSEDIFRL SENFPGMTDS MVSTPVSAAM PLLVEEDIFG DLPNIPLSPE NSSPENAFHS  300
SENTFQQQSP AANFATVSPY LGLCDEELAF HDISSNVLFS PGWFLPSVDA GFRQEGAFLW  360
EN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A3e-1778141973Ethylene-responsive transcription factor ERF096
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006837306.10.0ethylene-responsive transcription factor ERF043
TrEMBLW1NZQ70.0W1NZQ7_AMBTC; Uncharacterized protein
STRINGERN001600.0(Amborella trichopoda)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11590.13e-49ERF family protein
Publications ? help Back to Top
  1. Amborella Genome Project
    The Amborella genome and the evolution of flowering plants.
    Science, 2013. 342(6165): p. 1241089
    [PMID:24357323]