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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
Back to Top |
| TF ID |
evm_27.model.AmTr_v1.0_scaffold00111.125 |
| Common Name | AMTR_s00111p00144160, LOC18428307 |
| Organism |
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| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
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| Family |
C3H |
| Protein Properties |
Length: 373aa MW: 41359.4 Da PI: 6.6627 |
| Description |
C3H family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| evm_27.model.AmTr_v1.0_scaffold00111.125 | genome | TAGP | View CDS |
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| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | zf-CCCH | 24.7 | 4.2e-08 | 111 | 135 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS
zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26
+kt+lC+ f++ GtC+y +C+FaHg
evm_27.model.AmTr_v1.0_scaffold00111.125 111 FKTKLCCKFRA-GTCPYITNCNFAHG 135
69*********.*************8 PP
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| 2 | zf-CCCH | 44.1 | 3.4e-14 | 246 | 271 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS
zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26
+kt++C+ + tG+C++G++C+FaHg
evm_27.model.AmTr_v1.0_scaffold00111.125 246 WKTRICNKWETTGYCPFGSKCHFAHG 271
8************************9 PP
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| Protein Features
? help Back to Top |
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| Database |
Entry ID |
E-value |
Start |
End |
InterPro ID |
Description |
| SuperFamily | SSF90229 | 5.36E-8 | 107 | 141 | IPR000571 | Zinc finger, CCCH-type |
| Gene3D | G3DSA:4.10.1000.10 | 1.1E-14 | 108 | 143 | IPR000571 | Zinc finger, CCCH-type |
| PROSITE profile | PS50103 | 12.953 | 110 | 137 | IPR000571 | Zinc finger, CCCH-type |
| SMART | SM00356 | 0.0037 | 110 | 136 | IPR000571 | Zinc finger, CCCH-type |
| Pfam | PF00642 | 2.3E-5 | 111 | 135 | IPR000571 | Zinc finger, CCCH-type |
| SuperFamily | SSF90229 | 6.54E-7 | 182 | 211 | IPR000571 | Zinc finger, CCCH-type |
| Gene3D | G3DSA:4.10.1000.10 | 1.8E-8 | 182 | 211 | IPR000571 | Zinc finger, CCCH-type |
| SMART | SM00356 | 0.11 | 183 | 210 | IPR000571 | Zinc finger, CCCH-type |
| PROSITE profile | PS50103 | 13.685 | 183 | 211 | IPR000571 | Zinc finger, CCCH-type |
| Gene3D | G3DSA:4.10.1000.10 | 4.5E-17 | 241 | 275 | IPR000571 | Zinc finger, CCCH-type |
| SuperFamily | SSF90229 | 3.66E-10 | 242 | 276 | IPR000571 | Zinc finger, CCCH-type |
| SMART | SM00356 | 3.6E-9 | 245 | 272 | IPR000571 | Zinc finger, CCCH-type |
| PROSITE profile | PS50103 | 15.478 | 245 | 273 | IPR000571 | Zinc finger, CCCH-type |
| Pfam | PF00642 | 3.3E-11 | 246 | 271 | IPR000571 | Zinc finger, CCCH-type |
| Sequence ? help Back to Top |
| Protein Sequence Length: 373 aa
Download sequence Send
to blast |
MDYGNESIFH DKSGQTVIEI QANSDCWIPG VNDQGIWATD DDYGAWNGDQ DTISNPNFSE 60
PPQKRSRNPN TDPQNNGFIR DRNPNFSNNQ GNNVAEFTSL NRSKVIGKMF FKTKLCCKFR 120
AGTCPYITNC NFAHGIEELR KPPPNWQEIV AAQEDDRTQI IEREEHQIPS ISSTGLGGES 180
QRSYKGRHCK KFYTEEGCPY GDMCTFLHDE QSKARESVAI SLGPTGNGGG YGGGGGNGSN 240
QKPSNWKTRI CNKWETTGYC PFGSKCHFAH GLGELHRYGG GLVEMEGRDS STVPSDSKIN 300
TASSKVQTDA VTGSMASIPH MDTYHVGLQS QRSVSSLNQR QGLKPFQKWK GPDKISRIYG 360
DWIDDNEWES SR*
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