PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm_27.model.AmTr_v1.0_scaffold00110.46
Common NameAMTR_s00110p00085760
Organism
Amborella trichopoda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
Family C2H2
Protein Properties Length: 652aa    MW: 72991 Da    PI: 8.5236
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00110.46genomeTAGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H210.80.0015538560123
                                              EEETTTTEEESSHHHHHHHHHHT CS
                                  zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                                              ++Cp+C ++F++   L  H r+H
  evm_27.model.AmTr_v1.0_scaffold00110.46 538 HECPICFRVFTSGQALGGHKRSH 560
                                              79******************999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139121.9E-4933IPR007087Zinc finger, C2H2
SMARTSM003550.7931IPR015880Zinc finger, C2H2-like
SuperFamilySSF576671.46E-5931No hitNo description
PROSITE profilePS501579.141931IPR007087Zinc finger, C2H2
PROSITE patternPS0002801131IPR007087Zinc finger, C2H2
SuperFamilySSF576671.46E-593120No hitNo description
PROSITE profilePS501579.34998125IPR007087Zinc finger, C2H2
SMARTSM003550.1498120IPR015880Zinc finger, C2H2-like
PfamPF139126.6E-6100122IPR007087Zinc finger, C2H2
PROSITE patternPS000280100120IPR007087Zinc finger, C2H2
PfamPF139125.7E-12455479IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.596455482IPR007087Zinc finger, C2H2
SMARTSM003550.035455477IPR015880Zinc finger, C2H2-like
SuperFamilySSF576676.5E-8455477No hitNo description
PROSITE patternPS000280457477IPR007087Zinc finger, C2H2
SuperFamilySSF576676.5E-8533560No hitNo description
PfamPF139122.3E-11538562IPR007087Zinc finger, C2H2
SMARTSM003550.15538560IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.91538565IPR007087Zinc finger, C2H2
PROSITE patternPS000280540560IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 652 aa     Download sequence    Send to blast
MEEEQEYRHS CKFCKKKFSC GRALGGHMRS HMAVAASSET EEKPTLSLQK TLSPQKKKTA  60
NSSSECMALD HPGYGLRENP KKTWRISDSD EFLCGDTRFC KNCGKGFHSW KALFGHMRCH  120
REKWSESIEN NSWSLVPLER ENQQVLDSQS DNEGAPKKRR SRRTRYSSSS SYAPLSTLNA  180
SSCASETEHE QEAIAMCLMM LSRDVGSARD GVLDFSEVNS LSRSARSGLE NKNIRGIRPG  240
IESITDQKLV NGGLGSDHAS KKAEFDGSES KKPEFSSTDS GFVKEEWKKK TEFNGFNNRF  300
LKIEAEKQKS DESETLFVKG DTELGADSST RTRNGVSRLI EKDSREKNRY GELNGELGKH  360
SRERRRHSRI DTELGVGSSK RNRHGRSGIE LGKNSSERNG CHQFETELGK ASSERNRDDQ  420
FVDDLVQESS ERNMYNRQED SSSVKVHQTH KKGKYECTTC NKSFHSYQAL GGHRASHKKV  480
KGCFARIDGS DNSTETEVSP DQRPSMPDEK LKPYRLVNLM EGEGSGETNC GPSKSKIHEC  540
PICFRVFTSG QALGGHKRSH MASEASKAAI IQQQMPVVSE LLDLNLPAPM EEDTNSNTNV  600
HVGSKSWWTN GNNKIEEPRE AQILTDQSNV VSAKHAKFHS LSRPPRPCLQ V*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020519118.10.0uncharacterized protein LOC18427965
TrEMBLW1NWC20.0W1NWC2_AMBTC; Uncharacterized protein
STRINGERM999220.0(Amborella trichopoda)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP5450716
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45120.11e-29C2H2-like zinc finger protein
Publications ? help Back to Top
  1. Amborella Genome Project
    The Amborella genome and the evolution of flowering plants.
    Science, 2013. 342(6165): p. 1241089
    [PMID:24357323]