PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm_27.model.AmTr_v1.0_scaffold00107.26
Common NameAMTR_s00107p00095070, LOC18428348
Organism
Amborella trichopoda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
Family ERF
Protein Properties Length: 294aa    MW: 32361.3 Da    PI: 6.1032
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00107.26genomeTAGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.39.1e-19138188256
                                      AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkklege 56 
                                               y+GVr++  +g+WvAeIr p     r  r++lg+f taeeAa+a+++a+ kl+ge
  evm_27.model.AmTr_v1.0_scaffold00107.26 138 VYRGVRQRQ-WGKWVAEIRLPQ----RrMRVWLGTFLTAEEAARAYDRAAYKLRGE 188
                                              7*****999.**********93....35**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008472.0E-12138188IPR001471AP2/ERF domain
SMARTSM003801.7E-34138201IPR001471AP2/ERF domain
PROSITE profilePS5103223.617138195IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.4E-31138196IPR001471AP2/ERF domain
SuperFamilySSF541711.57E-22138197IPR016177DNA-binding domain
CDDcd000181.63E-19139197No hitNo description
PRINTSPR003679.2E-11139150IPR001471AP2/ERF domain
PRINTSPR003679.2E-11161177IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 294 aa     Download sequence    Send to blast
MTGSLEANAL SLFQFPRGDD WNPAITLSDI LLRGGGQTAL DSVLADNGGF SSADGLMPLG  60
SSIYFCQRDW LKQPERESIN QLLPHNYPSF CANISTNSNS TSGCICPGIS TSSLYQRRSP  120
SSENSVRVSS PSCKTRKVYR GVRQRQWGKW VAEIRLPQRR MRVWLGTFLT AEEAARAYDR  180
AAYKLRGEYA KLNFPMSREK GGRGMREVEA AVDAKLQAVW RRVGKGRGEE KERGVTGDDE  240
LGCRESGMGS GDGLSEEGYG CSSSPWEGDM EDDCFLAKMP SLEQELIWEV LAA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A8e-19137201469ATERF1
3gcc_A8e-19137201469ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006837446.10.0ethylene-responsive transcription factor ERF061
TrEMBLW1P0270.0W1P027_AMBTC; Uncharacterized protein
STRINGERN003000.0(Amborella trichopoda)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39780.19e-26ERF family protein
Publications ? help Back to Top
  1. Amborella Genome Project
    The Amborella genome and the evolution of flowering plants.
    Science, 2013. 342(6165): p. 1241089
    [PMID:24357323]