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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | evm_27.model.AmTr_v1.0_scaffold00105.24 | ||||||||
Common Name | AMTR_s00105p00052770 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
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Family | C2H2 | ||||||||
Protein Properties | Length: 165aa MW: 18545.9 Da PI: 6.7322 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 11.1 | 0.0012 | 60 | 80 | 3 | 23 |
ETTTTEEESSHHHHHHHHHHT CS zf-C2H2 3 CpdCgksFsrksnLkrHirtH 23 C+ C k+F++ + L H+ tH evm_27.model.AmTr_v1.0_scaffold00105.24 60 CKPCYKVFPSCEALSGHMTTH 80 888****************99 PP | |||||||
2 | zf-C2H2 | 12.4 | 0.00046 | 141 | 162 | 2 | 23 |
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 +C++C+ +F + ++L H+ +H evm_27.model.AmTr_v1.0_scaffold00105.24 141 ECKYCHLVFETFHELDGHMALH 162 5******************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 3.08E-6 | 57 | 80 | No hit | No description |
SMART | SM00355 | 7.4 | 58 | 80 | IPR015880 | Zinc finger, C2H2-like |
Pfam | PF13912 | 2.9E-5 | 60 | 80 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 60 | 80 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 3.08E-6 | 135 | 162 | No hit | No description |
SMART | SM00355 | 1.9 | 140 | 162 | IPR015880 | Zinc finger, C2H2-like |
Pfam | PF13912 | 3.0E-5 | 140 | 163 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 142 | 162 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 165 aa Download sequence Send to blast |
MTPPHSPPYH PHFRCKVFYK IFRITGKQLS APMTVDHKEK NTTSSLFSPS RENLKKLNVC 60 KPCYKVFPSC EALSGHMTTH GEQVGSIMIQ EKVKDNEAAI EEEEGNKTTH SDLGGSIMNQ 120 EKGKDNEAAI EEEGKDGGER ECKYCHLVFE TFHELDGHMA LHRN* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | W1NXG5 | 1e-119 | W1NXG5_AMBTC; Uncharacterized protein | ||||
STRING | ERN00034 | 1e-120 | (Amborella trichopoda) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G17180.1 | 4e-06 | C2H2-like zinc finger protein |
Link Out ? help Back to Top | |
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Phytozome | evm_27.model.AmTr_v1.0_scaffold00105.24 |
Publications ? help Back to Top | |||
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