PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm_27.model.AmTr_v1.0_scaffold00103.67
Common NameAMTR_s00103p00113520
Organism
Amborella trichopoda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
Family C2H2
Protein Properties Length: 312aa    MW: 34393.9 Da    PI: 7.6976
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00103.67genomeTAGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.23e-05283305223
                                              EETTTTEEESSHHHHHHHHHH.T CS
                                  zf-C2H2   2 kCpdCgksFsrksnLkrHirt.H 23 
                                              +Cp+C + F+++ +L+ H  + H
  evm_27.model.AmTr_v1.0_scaffold00103.67 283 VCPKCQRGFRDPVLLVEHVEKdH 305
                                              7*****************99888 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1183102.49E-13662No hitNo description
PROSITE profilePS510397.4162271IPR000058Zinc finger, AN1-type
Gene3DG3DSA:4.10.1110.109.5E-102361IPR000058Zinc finger, AN1-type
SMARTSM001540.00862564IPR000058Zinc finger, AN1-type
PfamPF014281.9E-112563IPR000058Zinc finger, AN1-type
Gene3DG3DSA:4.10.1110.101.3E-10103158IPR000058Zinc finger, AN1-type
SuperFamilySSF1183109.42E-10105155No hitNo description
PROSITE profilePS510397.809110163IPR000058Zinc finger, AN1-type
SMARTSM001540.041113154IPR000058Zinc finger, AN1-type
PfamPF014281.0E-8113153IPR000058Zinc finger, AN1-type
SMARTSM003550.26248271IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.93248276IPR007087Zinc finger, C2H2
PROSITE patternPS000280250271IPR007087Zinc finger, C2H2
SMARTSM0035510282305IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280284305IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 312 aa     Download sequence    Send to blast
MLTLTNFLDD LAMGTPEFPN LGRHCSVDDC RLIDFLPFTC DRCDQVLCLE HRSYSKHHCS  60
GPNKDDVTVL VCPLCAKGVR LDPEEDPNIT WESHVRTDCD PSNYQKATKK PRCPVPGCKE  120
TLVFSNTIRC KDCNRDHCLK HRFGLDHKCP GPKKPEPSFS FSGFLRGQKN EPSGPKWAWK  180
TETTGSRRAQ PQVPWGPSLL SAASSMRASA ESSFAKLSIA TSEALQKAKE GAMASWEAKG  240
QGSGALAEKC RQCGAQFGDV ADLINHVERV HEGPMNNGEA IDVCPKCQRG FRDPVLLVEH  300
VEKDHRGSSR S*
Functional Description ? help Back to Top
Source Description
UniProtMay be involved in environmental stress response. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00306DAPTransfer from AT2G41835Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By cold, dehydration and salt stress. {ECO:0000269|PubMed:17033811}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011621428.10.0zinc finger AN1 and C2H2 domain-containing stress-associated protein 16
RefseqXP_011621429.10.0zinc finger AN1 and C2H2 domain-containing stress-associated protein 16
RefseqXP_020519749.10.0zinc finger AN1 and C2H2 domain-containing stress-associated protein 16
RefseqXP_020519750.10.0zinc finger AN1 and C2H2 domain-containing stress-associated protein 16
SwissprotQ0D5B91e-120SAP16_ORYSJ; Zinc finger AN1 and C2H2 domain-containing stress-associated protein 16
TrEMBLW1P1N80.0W1P1N8_AMBTC; Uncharacterized protein
STRINGERN008650.0(Amborella trichopoda)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP19091520
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41835.11e-104C2H2 family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Amborella Genome Project
    The Amborella genome and the evolution of flowering plants.
    Science, 2013. 342(6165): p. 1241089
    [PMID:24357323]