PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | evm_27.model.AmTr_v1.0_scaffold00103.102 | ||||||||
Common Name | AMTR_s00103p00144230, LOC18428972 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
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Family | NF-YA | ||||||||
Protein Properties | Length: 351aa MW: 38211.7 Da PI: 7.8834 | ||||||||
Description | NF-YA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | CBFB_NFYA | 104.8 | 7.6e-33 | 179 | 235 | 1 | 58 |
CBFB_NFYA 1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 +ep+YVNaKQy++Il+RRq+Rak+e ekkl +k rkpylheSRh+hA+rR+Rg+gGrF evm_27.model.AmTr_v1.0_scaffold00103.102 179 EEPVYVNAKQYHGILRRRQSRAKAELEKKL-IKVRKPYLHESRHQHAMRRARGCGGRF 235 69****************************.**************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00521 | 8.9E-38 | 177 | 238 | IPR001289 | Nuclear transcription factor Y subunit A |
PROSITE profile | PS51152 | 38.032 | 178 | 238 | IPR001289 | Nuclear transcription factor Y subunit A |
Pfam | PF02045 | 6.3E-28 | 180 | 235 | IPR001289 | Nuclear transcription factor Y subunit A |
PRINTS | PR00616 | 2.9E-24 | 181 | 203 | IPR001289 | Nuclear transcription factor Y subunit A |
PROSITE pattern | PS00686 | 0 | 183 | 203 | IPR018362 | CCAAT-binding factor, conserved site |
PRINTS | PR00616 | 2.9E-24 | 212 | 235 | IPR001289 | Nuclear transcription factor Y subunit A |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010262 | Biological Process | somatic embryogenesis | ||||
GO:0048510 | Biological Process | regulation of timing of transition from vegetative to reproductive phase | ||||
GO:0055046 | Biological Process | microgametogenesis | ||||
GO:0016602 | Cellular Component | CCAAT-binding factor complex | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 351 aa Download sequence Send to blast |
MQPEPQHVNG IEHVSHPENA SVVGPQPWWR GGVSYNAIQG GLSENPAKSS AMEQIEFQLH 60 SKDSVTHGVG HPLADNLDGG TGITKDMQMM ATKPGPDGSY GHDPQHLQHV TNVIPPVVAE 120 YLVPHTQLEL GPSIARAPYP YSDPYYGGIM TAYGTQALVH PHLLGLHQSR MPLPLEMTEE 180 PVYVNAKQYH GILRRRQSRA KAELEKKLIK VRKPYLHESR HQHAMRRARG CGGRFLNTKK 240 GNSNATNPET SNKGTTPPTH SSNSSGSEPL PCDGHSTSPS NGIKFKDSMM HEEHDGHMYA 300 NGNANANGCY QHPGFHLSAF HSLSSERGQE GDCGGIMLSG RAPHRALTIQ * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4awl_A | 1e-20 | 179 | 243 | 2 | 66 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006838331.1 | 0.0 | nuclear transcription factor Y subunit A-1 | ||||
TrEMBL | W1P1S1 | 0.0 | W1P1S1_AMBTC; Uncharacterized protein | ||||
STRING | ERN00900 | 0.0 | (Amborella trichopoda) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP680 | 16 | 72 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G12840.3 | 1e-47 | nuclear factor Y, subunit A1 |
Link Out ? help Back to Top | |
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Phytozome | evm_27.model.AmTr_v1.0_scaffold00103.102 |
Entrez Gene | 18428972 |
Publications ? help Back to Top | |||
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