PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm_27.model.AmTr_v1.0_scaffold00102.24
Common NameAMTR_s00102p00056000
Organism
Amborella trichopoda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
Family bHLH
Protein Properties Length: 268aa    MW: 30270.2 Da    PI: 6.0566
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00102.24genomeTAGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH35.42e-1186127955
                                              HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                                      HLH   9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                                              ErrRR ++N+++  Lr+l+P+      +K++Ka+i+  Av Y+++Lq
  evm_27.model.AmTr_v1.0_scaffold00102.24  86 ERRRRGKLNERLYALRTLVPNI-----TKMDKASIVGDAVVYVQKLQ 127
                                              *********************7.....7******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.97777126IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.11E-1583145IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.9E-1583132IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.9E-1585144IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.27E-1285131No hitNo description
PfamPF000104.6E-985127IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0034756Biological Processregulation of iron ion transport
GO:0071281Biological Processcellular response to iron ion
GO:0071369Biological Processcellular response to ethylene stimulus
GO:0071732Biological Processcellular response to nitric oxide
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 268 aa     Download sequence    Send to blast
MESFENILNH LLTEEENREA FAYPTSSTEI FLAASPDVFF DLDCGSSSFK GGEMSPPSFF  60
FEEKGETVEA STLISPCDHS KTLSSERRRR GKLNERLYAL RTLVPNITKM DKASIVGDAV  120
VYVQKLQREA RELRKEIAIL ESTMQRDGAG QTSYNNNNTS SSYTIKHHSK AQSPCRKVLQ  180
MDVFQVDENG FYVRMICDKS EGVLAATWKA FESLPCYRLL SSNFATPSPE RTLITFTLQM  240
VEWEKKSNVP VLEQQLTQAL SKHGFQF*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020519502.10.0transcription factor FER-LIKE IRON DEFICIENCY-INDUCED TRANSCRIPTION FACTOR
TrEMBLW1NT690.0W1NT69_AMBTC; Uncharacterized protein
STRINGERN005220.0(Amborella trichopoda)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP72711118
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28160.14e-56FER-like regulator of iron uptake
Publications ? help Back to Top
  1. Amborella Genome Project
    The Amborella genome and the evolution of flowering plants.
    Science, 2013. 342(6165): p. 1241089
    [PMID:24357323]