PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | evm_27.model.AmTr_v1.0_scaffold00102.17 | ||||||||
Common Name | AMTR_s00102p00046460 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
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Family | bHLH | ||||||||
Protein Properties | Length: 249aa MW: 27688.2 Da PI: 4.7959 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 32.3 | 1.8e-10 | 93 | 135 | 8 | 55 |
HHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 8 rErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 ErrRR +N+++ Lr+l+P+ +K++Ka+i+ Av Y+ +Lq evm_27.model.AmTr_v1.0_scaffold00102.17 93 SERRRRGTLNERLYALRTLVPNI-----TKMDKASIVGDAVIYVEKLQ 135 6*********************7.....7*****************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 14.786 | 85 | 134 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 6.7E-14 | 87 | 152 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 4.17E-12 | 87 | 139 | No hit | No description |
SuperFamily | SSF47459 | 2.75E-15 | 87 | 152 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 2.4E-13 | 91 | 140 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 2.0E-8 | 93 | 135 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 249 aa Download sequence Send to blast |
MEGYGGTTME SFENVLNPLL TEDNGESFAC QTFSIEMFSA PSFGALFDLD YGSSSSFKGG 60 EMNPPSFLFE EERGTVESSA LISSCDRSKT LSSERRRRGT LNERLYALRT LVPNITKMDK 120 ASIVGDAVIY VEKLQREARE LRKEIAILES TMQREGGGQA SYNKNTSSSY TIKHHPKAQS 180 LCRKILQVDE NGFYVTMICE KSEGVLAATW ETLESLSCFY LLSSNFATPS PERTLITFTL 240 QVISLNQY* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011621304.1 | 1e-177 | transcription factor FER-LIKE IRON DEFICIENCY-INDUCED TRANSCRIPTION FACTOR | ||||
TrEMBL | W1P0N4 | 0.0 | W1P0N4_AMBTC; Uncharacterized protein | ||||
STRING | ERN00515 | 0.0 | (Amborella trichopoda) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP7271 | 11 | 18 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G28160.1 | 9e-48 | FER-like regulator of iron uptake |
Link Out ? help Back to Top | |
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Phytozome | evm_27.model.AmTr_v1.0_scaffold00102.17 |
Publications ? help Back to Top | |||
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