PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | evm_27.model.AmTr_v1.0_scaffold00101.124 | ||||||||
Common Name | AMTR_s00101p00150740, LOC18427151 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
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Family | bHLH | ||||||||
Protein Properties | Length: 264aa MW: 29109.7 Da PI: 6.5147 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 40.6 | 4.4e-13 | 80 | 126 | 3 | 54 |
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 r+h+e+E+rRR+riN f++Lr llP++ K +Ka+ L +A++ +k+L evm_27.model.AmTr_v1.0_scaffold00101.124 80 RSHSEAEKRRRERINGHFDKLRHLLPSN-----VKRDKASLLAEAIRRLKEL 126 68*************************9.....7*************99998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 16.012 | 77 | 126 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.4E-10 | 80 | 126 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 6.99E-13 | 80 | 129 | No hit | No description |
SuperFamily | SSF47459 | 1.44E-13 | 81 | 134 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 6.5E-12 | 81 | 133 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 2.2E-11 | 83 | 132 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 264 aa Download sequence Send to blast |
MWTKREVNQE SESYGYYWGA HEELEPGPLM ADPSSSLGVS ANLDAFSSYY CYGGNGFHGV 60 EVGGMREKGA VDAKAMAALR SHSEAEKRRR ERINGHFDKL RHLLPSNVKR DKASLLAEAI 120 RRLKELKLQT SEISAMGPIP DESDEVTVEC SGEFPSDSGK SSGQPVVMAS FSCDDRSDLL 180 PELITTLKSL RLKTIRAEIQ TLEGRMRHVL HVTCEDSGQN SLDCGDLTAG MLQEALKQVV 240 HRSPEDRKMF SGGLKRQRTN SGF* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006836269.1 | 0.0 | transcription factor bHLH30 | ||||
TrEMBL | W1NU54 | 0.0 | W1NU54_AMBTC; Uncharacterized protein | ||||
STRING | ERM99122 | 0.0 | (Amborella trichopoda) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP377 | 15 | 106 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G68810.1 | 2e-46 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | evm_27.model.AmTr_v1.0_scaffold00101.124 |
Entrez Gene | 18427151 |
Publications ? help Back to Top | |||
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