PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm_27.model.AmTr_v1.0_scaffold00101.124
Common NameAMTR_s00101p00150740, LOC18427151
Organism
Amborella trichopoda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
Family bHLH
Protein Properties Length: 264aa    MW: 29109.7 Da    PI: 6.5147
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00101.124genomeTAGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH40.64.4e-1380126354
                                               HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                                       HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                                               r+h+e+E+rRR+riN  f++Lr llP++      K +Ka+ L +A++ +k+L
  evm_27.model.AmTr_v1.0_scaffold00101.124  80 RSHSEAEKRRRERINGHFDKLRHLLPSN-----VKRDKASLLAEAIRRLKEL 126
                                               68*************************9.....7*************99998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088816.01277126IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.4E-1080126IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.99E-1380129No hitNo description
SuperFamilySSF474591.44E-1381134IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.5E-1281133IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.2E-1183132IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 264 aa     Download sequence    Send to blast
MWTKREVNQE SESYGYYWGA HEELEPGPLM ADPSSSLGVS ANLDAFSSYY CYGGNGFHGV  60
EVGGMREKGA VDAKAMAALR SHSEAEKRRR ERINGHFDKL RHLLPSNVKR DKASLLAEAI  120
RRLKELKLQT SEISAMGPIP DESDEVTVEC SGEFPSDSGK SSGQPVVMAS FSCDDRSDLL  180
PELITTLKSL RLKTIRAEIQ TLEGRMRHVL HVTCEDSGQN SLDCGDLTAG MLQEALKQVV  240
HRSPEDRKMF SGGLKRQRTN SGF*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006836269.10.0transcription factor bHLH30
TrEMBLW1NU540.0W1NU54_AMBTC; Uncharacterized protein
STRINGERM991220.0(Amborella trichopoda)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP37715106
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68810.12e-46bHLH family protein
Publications ? help Back to Top
  1. Amborella Genome Project
    The Amborella genome and the evolution of flowering plants.
    Science, 2013. 342(6165): p. 1241089
    [PMID:24357323]