PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | evm_27.model.AmTr_v1.0_scaffold00100.19 | ||||||||
Common Name | AMTR_s00100p00078730, LOC18428476 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
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Family | bHLH | ||||||||
Protein Properties | Length: 594aa MW: 66669.9 Da PI: 5.013 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 35.3 | 2.1e-11 | 351 | 394 | 7 | 55 |
HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +Er+RR+++ +++ Lr+l+Pk +K++ a+iL A+eY+k+Lq evm_27.model.AmTr_v1.0_scaffold00100.19 351 VAERKRRKKLSERLYALRSLVPKI-----TKMDRASILGDAIEYVKELQ 394 68*********************7.....7******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF14215 | 1.6E-19 | 7 | 164 | IPR025610 | Transcription factor MYC/MYB N-terminal |
CDD | cd00083 | 1.66E-13 | 341 | 398 | No hit | No description |
PROSITE profile | PS50888 | 15.745 | 344 | 393 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 5.89E-17 | 347 | 417 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 4.6E-16 | 350 | 413 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.1E-13 | 350 | 399 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 6.2E-9 | 351 | 394 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd04873 | 0.00574 | 494 | 557 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009555 | Biological Process | pollen development | ||||
GO:0048658 | Biological Process | anther wall tapetum development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0000978 | Molecular Function | RNA polymerase II core promoter proximal region sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 594 aa Download sequence Send to blast |
MNSGYFQERL RTLLATKRWN YCVYWKPSND QRNIEWVGCC CGGATENGDS ENGLVGSFAS 60 KFYCRDTVLP HPPTQSCHLL LASPTSIPLD SAAAGVYAQV LLSGQARWIN TNTQPTHLTD 120 CSEVGANTNN NNTRAFIPVP GGGLVELFAF DNVSEDREVI EFVMEEQWPA NCPPEHPLHQ 180 ESWQQQRQEA MMISSSSSSA IKEIPFHFSS ENLVGNYQSF EPQSPTDLQE DYERRYYYHH 240 HQMLDNRQKD FHHHPPWTGV PSPSDWGSYG QQQLRNNNVL FDGSADSLLS DDMMKPPISF 300 PNLKSTSSSS QVKQEGEQEG EQRGDSISDC SEDDDEQKAR SGRKHQSKNL VAERKRRKKL 360 SERLYALRSL VPKITKMDRA SILGDAIEYV KELQMLVKAL QEELEETTEE ERQQQQQQGN 420 GGDGGAPPAT TPSSDCNNHG GFSVMEERVE ESSSSNHLLH IPNINNDCSD DKAQQQQMEV 480 QVEVSQVGAH EFNLKIFCEK SSGGFARLMQ AMDALGLEVI HVNITTYMSL VLNVFKVEMR 540 DNEAIQAEHV RDSLLELTRN PNGWPSPVPK LQHVHLRELP PPIGAANFSS IHI* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5gnj_A | 5e-13 | 342 | 419 | 2 | 80 | Transcription factor MYC2 |
5gnj_B | 5e-13 | 342 | 419 | 2 | 80 | Transcription factor MYC2 |
5gnj_E | 5e-13 | 342 | 419 | 2 | 80 | Transcription factor MYC2 |
5gnj_F | 5e-13 | 342 | 419 | 2 | 80 | Transcription factor MYC2 |
5gnj_G | 5e-13 | 342 | 419 | 2 | 80 | Transcription factor MYC2 |
5gnj_I | 5e-13 | 342 | 419 | 2 | 80 | Transcription factor MYC2 |
5gnj_M | 5e-13 | 342 | 419 | 2 | 80 | Transcription factor MYC2 |
5gnj_N | 5e-13 | 342 | 419 | 2 | 80 | Transcription factor MYC2 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 352 | 359 | ERKRRKKL |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006837855.1 | 0.0 | transcription factor ABORTED MICROSPORES isoform X2 | ||||
TrEMBL | W1NYG1 | 0.0 | W1NYG1_AMBTC; Uncharacterized protein | ||||
STRING | ERN00424 | 0.0 | (Amborella trichopoda) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G16910.1 | 3e-39 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | evm_27.model.AmTr_v1.0_scaffold00100.19 |
Entrez Gene | 18428476 |
Publications ? help Back to Top | |||
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