PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm_27.model.AmTr_v1.0_scaffold00100.19
Common NameAMTR_s00100p00078730, LOC18428476
Organism
Amborella trichopoda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
Family bHLH
Protein Properties Length: 594aa    MW: 66669.9 Da    PI: 5.013
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00100.19genomeTAGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH35.32.1e-11351394755
                                              HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                                      HLH   7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                                               +Er+RR+++ +++  Lr+l+Pk      +K++ a+iL  A+eY+k+Lq
  evm_27.model.AmTr_v1.0_scaffold00100.19 351 VAERKRRKKLSERLYALRSLVPKI-----TKMDRASILGDAIEYVKELQ 394
                                              68*********************7.....7******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142151.6E-197164IPR025610Transcription factor MYC/MYB N-terminal
CDDcd000831.66E-13341398No hitNo description
PROSITE profilePS5088815.745344393IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474595.89E-17347417IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.6E-16350413IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.1E-13350399IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.2E-9351394IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd048730.00574494557No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009555Biological Processpollen development
GO:0048658Biological Processanther wall tapetum development
GO:0005634Cellular Componentnucleus
GO:0000978Molecular FunctionRNA polymerase II core promoter proximal region sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 594 aa     Download sequence    Send to blast
MNSGYFQERL RTLLATKRWN YCVYWKPSND QRNIEWVGCC CGGATENGDS ENGLVGSFAS  60
KFYCRDTVLP HPPTQSCHLL LASPTSIPLD SAAAGVYAQV LLSGQARWIN TNTQPTHLTD  120
CSEVGANTNN NNTRAFIPVP GGGLVELFAF DNVSEDREVI EFVMEEQWPA NCPPEHPLHQ  180
ESWQQQRQEA MMISSSSSSA IKEIPFHFSS ENLVGNYQSF EPQSPTDLQE DYERRYYYHH  240
HQMLDNRQKD FHHHPPWTGV PSPSDWGSYG QQQLRNNNVL FDGSADSLLS DDMMKPPISF  300
PNLKSTSSSS QVKQEGEQEG EQRGDSISDC SEDDDEQKAR SGRKHQSKNL VAERKRRKKL  360
SERLYALRSL VPKITKMDRA SILGDAIEYV KELQMLVKAL QEELEETTEE ERQQQQQQGN  420
GGDGGAPPAT TPSSDCNNHG GFSVMEERVE ESSSSNHLLH IPNINNDCSD DKAQQQQMEV  480
QVEVSQVGAH EFNLKIFCEK SSGGFARLMQ AMDALGLEVI HVNITTYMSL VLNVFKVEMR  540
DNEAIQAEHV RDSLLELTRN PNGWPSPVPK LQHVHLRELP PPIGAANFSS IHI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A5e-13342419280Transcription factor MYC2
5gnj_B5e-13342419280Transcription factor MYC2
5gnj_E5e-13342419280Transcription factor MYC2
5gnj_F5e-13342419280Transcription factor MYC2
5gnj_G5e-13342419280Transcription factor MYC2
5gnj_I5e-13342419280Transcription factor MYC2
5gnj_M5e-13342419280Transcription factor MYC2
5gnj_N5e-13342419280Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1352359ERKRRKKL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006837855.10.0transcription factor ABORTED MICROSPORES isoform X2
TrEMBLW1NYG10.0W1NYG1_AMBTC; Uncharacterized protein
STRINGERN004240.0(Amborella trichopoda)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G16910.13e-39bHLH family protein
Publications ? help Back to Top
  1. Amborella Genome Project
    The Amborella genome and the evolution of flowering plants.
    Science, 2013. 342(6165): p. 1241089
    [PMID:24357323]