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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
Back to Top |
| TF ID |
evm_27.model.AmTr_v1.0_scaffold00099.117 |
| Common Name | AMTR_s00099p00131560 |
| Organism |
|
| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
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| Family |
NAC |
| Protein Properties |
Length: 360aa MW: 41409.4 Da PI: 7.3844 |
| Description |
NAC family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| evm_27.model.AmTr_v1.0_scaffold00099.117 | genome | TAGP | View CDS |
|
| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | NAM | 170.9 | 4e-53 | 7 | 136 | 1 | 129 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvka.eekewyfFskrdk 66
+ppGfrFhPtdeel+ +yL+kkv+ +k++l evi+evd++k+ePwdL++ ++ a ++ewyfFs++dk
evm_27.model.AmTr_v1.0_scaffold00099.117 7 VPPGFRFHPTDEELLYYYLRKKVTYQKFDL-EVIREVDLNKMEPWDLQErcRIGAtPQNEWYFFSHKDK 74
69****************************.99**************963433332556********** PP
NAM 67 kyatgkrknratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrle 129
ky+tg+r+nrat++g+Wkatg+dk +++ + +++g++ktLvfykgrap+g+ktdW+mheyrle
evm_27.model.AmTr_v1.0_scaffold00099.117 75 KYPTGSRTNRATSAGFWKATGRDKCIKN-SYKKIGMRKTLVFYKGRAPHGQKTDWIMHEYRLE 136
***************************9.8999****************************85 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0009834 | Biological Process | plant-type secondary cell wall biogenesis |
| GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated |
| GO:0048829 | Biological Process | root cap development |
| GO:0005634 | Cellular Component | nucleus |
| GO:0003677 | Molecular Function | DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 360 aa
Download sequence Send
to blast |
MTSSAGVPPG FRFHPTDEEL LYYYLRKKVT YQKFDLEVIR EVDLNKMEPW DLQERCRIGA 60
TPQNEWYFFS HKDKKYPTGS RTNRATSAGF WKATGRDKCI KNSYKKIGMR KTLVFYKGRA 120
PHGQKTDWIM HEYRLEENNE VNEDGWVVCR VFKKKNFFKV PQEASTSLSM EQESSNIMNH 180
GVDRESVERE GSHRGLQYNH HLHHHNQPAF DLYKPPELGL QFTNMNPSHD LQMQVQAQIQ 240
SQRPPLGYDF SGLSASSETI AKPFLQIQRP CEGESFSKNL SYQACDNGMN MNMAQCGAPQ 300
EMVEMREDNL NDWSALLVGS HLSGEDSSKA MRYSDANAAS NTINPAPLRN EIDLWNFAK*
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| 3D Structure ? help Back to Top |
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| PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
| 1ut4_A | 4e-52 | 7 | 156 | 17 | 167 | NO APICAL MERISTEM PROTEIN |
| 1ut4_B | 4e-52 | 7 | 156 | 17 | 167 | NO APICAL MERISTEM PROTEIN |
| 1ut7_A | 4e-52 | 7 | 156 | 17 | 167 | NO APICAL MERISTEM PROTEIN |
| 1ut7_B | 4e-52 | 7 | 156 | 17 | 167 | NO APICAL MERISTEM PROTEIN |
| 4dul_A | 4e-52 | 7 | 156 | 17 | 167 | NAC domain-containing protein 19 |
| 4dul_B | 4e-52 | 7 | 156 | 17 | 167 | NAC domain-containing protein 19 |
| Search in ModeBase |
| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Transcription activator. Together with BRN1 and SMB, regulates cellular maturation of root cap. Promotes the expression of genes involved in secondary cell walls (SCW) biosynthesis. {ECO:0000269|PubMed:20197506}. |
| Orthologous Group
? help Back to Top |
| Lineage | Orthologous Group ID | Taxa Number | Gene Number |
| Representative plant | OGRP17 | 15 | 800 |
