PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella

Family

ERF

Protein Properties

Length: 190aa MW: 21178.8 Da PI: 4.7264

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00099.104	genome	TAGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	51.5	2.6e-16	33	81	3	55
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 ++GVr ++ +gr+v+eIr+p++ ++r++lg+f ++e+Aa+a++ a+ l+g evm_27.model.AmTr_v1.0_scaffold00099.104 33 FRGVRKRS-WGRYVSEIREPKK---KTRIWLGSFLSPEMAARAYDSAAFFLKG 81 8**888.******854...6*********************9988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51032	21.193	32	89	IPR001471	AP2/ERF domain
SMART	SM00380	1.1E-30	32	95	IPR001471	AP2/ERF domain
Gene3D	G3DSA:3.30.730.10	3.0E-28	32	90	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	2.09E-18	32	90	IPR016177	DNA-binding domain
Pfam	PF00847	9.2E-10	33	81	IPR001471	AP2/ERF domain
PRINTS	PR00367	2.9E-10	33	44	IPR001471	AP2/ERF domain
CDD	cd00018	2.86E-26	33	91	No hit	No description
PRINTS	PR00367	2.9E-10	71	91	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 190 aa Download sequence Send to blast
MANSPVPESL AGTDFPVKRT AGNQLPGDQK TTFRGVRKRS WGRYVSEIRE PKKKTRIWLG 60 SFLSPEMAAR AYDSAAFFLK GNKSALNFPE LAEFLPRPAS NSRRDIQAAA LKAANEIFVA 120 ESFGEIEDER VEEIDLGFSR NFGDVLSLEF DGELMDFFER VADAPLMSPL RIEAEGQGNF 180 GTFTTEFYF*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5wx9_A	4e-16	22	90	4	73	Ethylene-responsive transcription factor ERF096
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020519047.1	1e-135	ethylene-responsive transcription factor ERF039
Swissprot	Q8LBQ7	3e-33	ERF34_ARATH; Ethylene-responsive transcription factor ERF034
TrEMBL	W1NYJ0	1e-133	W1NYJ0_AMBTC; Uncharacterized protein
STRING	ERM99749	1e-134	(Amborella trichopoda)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP6	16	1718

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G25810.1	7e-36	ERF family protein

Link Out ? help Back to Top
Phytozome	evm_27.model.AmTr_v1.0_scaffold00099.104

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Amborella Genome Project The Amborella genome and the evolution of flowering plants. Science, 2013. 342(6165): p. 1241089 [PMID:24357323] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]