PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm_27.model.AmTr_v1.0_scaffold00096.31
Common NameAMTR_s00096p00076220
Organism
Amborella trichopoda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
Family MYB
Protein Properties Length: 399aa    MW: 46069.6 Da    PI: 6.9472
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00096.31genomeTAGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.98.2e-17178224148
                                              TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
                          Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                                              +g WT eEd ll+++v q+G + W+ Ia+++  gR +kqc++rw+++l
  evm_27.model.AmTr_v1.0_scaffold00096.31 178 KGQWTLEEDRLLIHLVDQYGVRKWSQIAKMFK-GRVGKQCRERWHNHL 224
                                              799****************************9.*************97 PP
2Myb_DNA-binding56.56.1e-18230272145
                                              TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
                          Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                                              ++ WT+eE++llv+a+ + G++ W+ Iar+++ gRt++ +k++w+
  evm_27.model.AmTr_v1.0_scaffold00096.31 230 KDTWTEEEEKLLVQAHLEIGNK-WAEIARRLP-GRTENAIKNHWN 272
                                              679*******************.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129431.11173228IPR017930Myb domain
SuperFamilySSF466894.4E-31175271IPR009057Homeodomain-like
SMARTSM007171.3E-15177226IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.8E-27179231IPR009057Homeodomain-like
PfamPF139218.9E-20181241No hitNo description
CDDcd001673.42E-14181224No hitNo description
PROSITE profilePS5129421.335229279IPR017930Myb domain
SMARTSM007174.1E-16229277IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.5E-21232279IPR009057Homeodomain-like
CDDcd001675.54E-12232275No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010183Biological Processpollen tube guidance
GO:0045697Biological Processregulation of synergid differentiation
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 399 aa     Download sequence    Send to blast
MEGGEGFMKN QNQMMEMTPP ISSYLCSGFS PKQAFDLPFY RDEFHENYIN QNPDFCNQDQ  60
KPMPHFSNLY CSNNFHPNPS EPASPNDQDF FGHFDCGCQN SSFFSDNQNF QNYKLGYGNG  120
VFACQPPSSS KEIKEERTIW ENASESFGSS LGSTEEALLA KKPKEKSNQM HKRPNLVKGQ  180
WTLEEDRLLI HLVDQYGVRK WSQIAKMFKG RVGKQCRERW HNHLRPNIKK DTWTEEEEKL  240
LVQAHLEIGN KWAEIARRLP GRTENAIKNH WNATKRRQLS RKKTRASETR QNRASSILQD  300
YIKSLNQPSP SPSPSPSITN LKTEPAAMQA VNQFLGEFHT DRSMDFYHPL FSGLPPFPFM  360
EEEGTQKLEA PPLELNNVEF EQGRKEMDLM ELISQQNF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h88_C6e-4517427954159MYB PROTO-ONCOGENE PROTEIN
1h89_C6e-4517427954159MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00442DAPTransfer from AT4G18770Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007036240.27e-75PREDICTED: transcription factor MYB98
TrEMBLW1P3730.0W1P373_AMBTC; Uncharacterized protein
STRINGERN023630.0(Amborella trichopoda)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18770.13e-64myb domain protein 98
Publications ? help Back to Top
  1. Amborella Genome Project
    The Amborella genome and the evolution of flowering plants.
    Science, 2013. 342(6165): p. 1241089
    [PMID:24357323]