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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | evm_27.model.AmTr_v1.0_scaffold00096.22 | ||||||||
Common Name | AMTR_s00096p00054100, LOC18430463 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
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Family | YABBY | ||||||||
Protein Properties | Length: 187aa MW: 20980.1 Da PI: 7.1248 | ||||||||
Description | YABBY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | YABBY | 186.7 | 1.2e-57 | 6 | 163 | 2 | 169 |
YABBY 2 dvfssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeel 71 ++f+ +eq+CyvqC+fC+til+vsvP +s++k+vtvrCGhC +llsvn++ ++ l+ + sl++++ evm_27.model.AmTr_v1.0_scaffold00096.22 6 HIFEFPEQLCYVQCTFCDTILLVSVPCSSMLKMVTVRCGHCNNLLSVNMKLRASFLPLHL--ISSLTNQV 73 68999*********************************************9999998754..23332222 PP YABBY 72 leelkveeenlksnvekeesastsvsseklsenedeevprvppvirPPekrqrvPsaynrfikeeiqrik 141 + +l s +++++ + +++ ++ s+ +++e++ +++v++PPekr r+Psaynrfikeeiqr+k evm_27.model.AmTr_v1.0_scaffold00096.22 74 P------TLSL-SLSQASQELRIDTPINT-SSPKKDEITPPKHVNKPPEKRHRAPSAYNRFIKEEIQRLK 135 2......2222.22223333344444444.5555666666788*************************** PP YABBY 142 asnPdishreafsaaaknWahfPkihfg 169 a P i+h+eafsaaaknWahfP+i f+ evm_27.model.AmTr_v1.0_scaffold00096.22 136 AREPTITHKEAFSAAAKNWAHFPRIPFN 163 *************************885 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04690 | 2.2E-64 | 11 | 163 | IPR006780 | YABBY protein |
SuperFamily | SSF47095 | 4.45E-7 | 106 | 158 | IPR009071 | High mobility group box domain |
Gene3D | G3DSA:1.10.30.10 | 5.1E-5 | 110 | 158 | IPR009071 | High mobility group box domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009944 | Biological Process | polarity specification of adaxial/abaxial axis | ||||
GO:0048481 | Biological Process | plant ovule development | ||||
GO:0005634 | Cellular Component | nucleus |
Sequence ? help Back to Top |
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Protein Sequence Length: 187 aa Download sequence Send to blast |
MSSCEHIFEF PEQLCYVQCT FCDTILLVSV PCSSMLKMVT VRCGHCNNLL SVNMKLRASF 60 LPLHLISSLT NQVPTLSLSL SQASQELRID TPINTSSPKK DEITPPKHVN KPPEKRHRAP 120 SAYNRFIKEE IQRLKAREPT ITHKEAFSAA AKNWAHFPRI PFNVEADGCT QEEGNGDEVV 180 LMENNE* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Essential for the formation and the abaxial-adaxial asymmetric growth of the ovule outer integument. {ECO:0000269|PubMed:10601041, ECO:0000269|PubMed:12183380, ECO:0000269|PubMed:9093862, ECO:0000269|PubMed:9118807}. | |||||
UniProt | May be involved in leaf cell growth and differentiation, rather than abaxial cell fate determination. {ECO:0000250}. | |||||
UniProt | May be involved in leaf cell growth and differentiation, rather than abaxial cell fate determination. {ECO:0000269|PubMed:17351053}. | |||||
UniProt | Promotes adaxial cell identity. Regulates the initiation of embryonic shoot apical meristem (SAM) development. {ECO:0000269|PubMed:19837869}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Autoinduction down-regulated by SUP in adaxial region of the ovule outer integument. Negatively and spatially regulated by HLL, ANT, BELL1, NZZ/SPL and SUP. {ECO:0000269|PubMed:10601041, ECO:0000269|PubMed:12183380, ECO:0000269|PubMed:12183381}. | |||||
UniProt | INDUCTION: Repressed by WOX3. {ECO:0000269|PubMed:17351053}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006840679.1 | 1e-137 | axial regulator YABBY 5 isoform X1 | ||||
Swissprot | Q01JG2 | 6e-46 | YAB5_ORYSI; Protein YABBY 5 | ||||
Swissprot | Q0JBF0 | 6e-46 | YAB5_ORYSJ; Protein YABBY 5 | ||||
Swissprot | Q8GW46 | 4e-47 | YAB5_ARATH; Axial regulator YABBY 5 | ||||
Swissprot | Q9LDT3 | 3e-46 | YAB4_ARATH; Axial regulator YABBY 4 | ||||
TrEMBL | W1P3Y5 | 1e-136 | W1P3Y5_AMBTC; Uncharacterized protein | ||||
STRING | ERN02354 | 1e-136 | (Amborella trichopoda) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP9612 | 7 | 12 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G26580.2 | 4e-48 | YABBY family protein |
Link Out ? help Back to Top | |
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Phytozome | evm_27.model.AmTr_v1.0_scaffold00096.22 |
Entrez Gene | 18430463 |