PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm_27.model.AmTr_v1.0_scaffold00095.56
Common NameAMTR_s00095p00096190
Organism
Amborella trichopoda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
Family ERF
Protein Properties Length: 267aa    MW: 29258 Da    PI: 8.3864
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00095.56genomeTAGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP249.69.6e-16102152155
                                      AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                                              + ++GVr +++ g+Wv+eIr+p +   + r++lg++  +e+Aa+a++ a  +l+g
  evm_27.model.AmTr_v1.0_scaffold00095.56 102 PVFRGVR-HRNGGKWVCEIREPQK---KSRIWLGTYTCPEMAARAHDVAVIALRG 152
                                              579***9.7779*********943...6***********************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.3E-9102152IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.7E-28103162IPR001471AP2/ERF domain
PROSITE profilePS5103220.455103160IPR001471AP2/ERF domain
SuperFamilySSF541717.19E-19103162IPR016177DNA-binding domain
SMARTSM003801.9E-25103166IPR001471AP2/ERF domain
PRINTSPR003671.8E-6104115IPR001471AP2/ERF domain
CDDcd000181.44E-24104162No hitNo description
PRINTSPR003671.8E-6126142IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 267 aa     Download sequence    Send to blast
MIATCYPSSS SSISHVRLNA LHVSNHCNYL PENETLFAKR TVSSDDGYRN SPFSKDASAA  60
TSDGFSTCSP SSSSSPLDVW SEPRHVPKRK AGRKKFKETR HPVFRGVRHR NGGKWVCEIR  120
EPQKKSRIWL GTYTCPEMAA RAHDVAVIAL RGKGATLNFA DSAWRLPAAR TTSPEDIREA  180
AQTAIEHLTV AVAAATPGTQ SRKPARPSRE LTSSVEPLFI DVEALFDMPG LITDLAEGLL  240
ITPPSFKVVS SWDDVDCHVD LDLWNQ*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00557DAPTransfer from AT5G51990Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006832878.20.0dehydration-responsive element-binding protein 1F
TrEMBLW1NP510.0W1NP51_AMBTC; Uncharacterized protein
STRINGERM981560.0(Amborella trichopoda)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51990.12e-56C-repeat-binding factor 4
Publications ? help Back to Top
  1. Amborella Genome Project
    The Amborella genome and the evolution of flowering plants.
    Science, 2013. 342(6165): p. 1241089
    [PMID:24357323]