PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm_27.model.AmTr_v1.0_scaffold00095.3
Common NameAMTR_s00095p00016160
Organism
Amborella trichopoda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
Family HSF
Protein Properties Length: 292aa    MW: 33694.1 Da    PI: 6.4576
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00095.3genomeTAGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind112.62.7e-35251172103
                                             HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTT CS
                            HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekks 72 
                                             Fl+k+y++++d+ +++++sw e+ +sfvv+ + efa+++Lp+yFkh+nf+SFvRQLn+YgF+kv  ++   
  evm_27.model.AmTr_v1.0_scaffold00095.3  25 FLTKTYQLVNDPCTDHIVSWGEDDTSFVVWRPPEFARDLLPNYFKHNNFSSFVRQLNTYGFRKVVPDR--- 92 
                                             9*****************************************************************99... PP

                                             TTXTTSEEEEESXXXXXXXXXXXXXXXXXXX CS
                            HSF_DNA-bind  73 kskekiweFkhksFkkgkkellekikrkkse 103
                                                   weF+++ Fk+g+ +ll++i+r+k +
  evm_27.model.AmTr_v1.0_scaffold00095.3  93 ------WEFANEFFKRGEMHLLCEIHRRKAT 117
                                             ......**********************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.102.6E-3816109IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004153.5E-6021114IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467854.49E-3422114IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004476.9E-3225114IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.1E-192548IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.1E-196375IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043406488IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.1E-197688IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042802Molecular Functionidentical protein binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 292 aa     Download sequence    Send to blast
MGLVVEGVGE MLVSLENQKA VPAPFLTKTY QLVNDPCTDH IVSWGEDDTS FVVWRPPEFA  60
RDLLPNYFKH NNFSSFVRQL NTYGFRKVVP DRWEFANEFF KRGEMHLLCE IHRRKATHPP  120
PPPPPPPPPL TLSHLNTFSL YTKPFESDEL QTYPESPLSS PNTTDLATAL AEDNKRLRRS  180
NSLLLSELSH MRRLYNGIIY FLQNHVKPVP HPKFSDPPLI TQQRLHDSIG FEDPLKETEE  240
RERNLGEEEE DPINTVKLFG VPLHGRKRLR SEVLEHEDHR LEFHGKHAES P*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B8e-222111426129Heat shock factor protein 1
5d5v_B8e-222111426129Heat shock factor protein 1
5d5v_D8e-222111426129Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000269|PubMed:16202242}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020517998.10.0heat stress transcription factor B-4b isoform X1
SwissprotQ7XHZ04e-90HFB4B_ORYSJ; Heat stress transcription factor B-4b
TrEMBLW1NRD50.0W1NRD5_AMBTC; Uncharacterized protein
STRINGERM981030.0(Amborella trichopoda)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP9617233
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G46264.19e-76heat shock transcription factor B4
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Amborella Genome Project
    The Amborella genome and the evolution of flowering plants.
    Science, 2013. 342(6165): p. 1241089
    [PMID:24357323]