PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm_27.model.AmTr_v1.0_scaffold00093.55
Common NameAMTR_s00093p00164790
Organism
Amborella trichopoda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
Family C2H2
Protein Properties Length: 336aa    MW: 37462.9 Da    PI: 7.079
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00093.55genomeTAGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.91.8e-05138157120
                                              EEETTTTEEESSHHHHHHHH CS
                                  zf-C2H2   1 ykCpdCgksFsrksnLkrHi 20 
                                              + C+ C+ksF+r  n++ H+
  evm_27.model.AmTr_v1.0_scaffold00093.55 138 FACSVCNKSFNRYNNMQMHM 157
                                              78*****************9 PP
2zf-C2H211.90.00067222244123
                                              EEETTTTEEESSHHHHHHHHHHT CS
                                  zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                                              + C +Cgk F  + + ++H +++
  evm_27.model.AmTr_v1.0_scaffold00093.55 222 FACRKCGKLFAVRGDWRTHEKNC 244
                                              78*****************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.27E-5134162No hitNo description
PfamPF139128.8E-5138157IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.907138165IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.3E-6138157IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.11138160IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280140160IPR007087Zinc finger, C2H2
SMARTSM00355280185217IPR015880Zinc finger, C2H2-like
SuperFamilySSF576674.85E-6205242No hitNo description
Gene3DG3DSA:3.30.160.602.0E-5208242IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM0035578222242IPR015880Zinc finger, C2H2-like
SMARTSM00355220248273IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010087Biological Processphloem or xylem histogenesis
GO:0010305Biological Processleaf vascular tissue pattern formation
GO:0010588Biological Processcotyledon vascular tissue pattern formation
GO:0048364Biological Processroot development
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 336 aa     Download sequence    Send to blast
MLHHHHLGPS PPLITRTAPS GACSRNWVGR FSEPTSCLGN VRQAEDQMEE EELLEEDAVF  60
LSLAPPGQQR VSPNKHEQLH ARALHSGNSD DGVTIALQIG ATGGAVEGTV GVNGVRVLAE  120
GQYWIPSPAQ ILVGPTQFAC SVCNKSFNRY NNMQMHMWGH GSEYRKGPES LRGAKPSSLL  180
RLPCYCCAEG CRNNIQHPRS RPLKDFRTLQ THYKRKHGAK PFACRKCGKL FAVRGDWRTH  240
EKNCGKLWFC ICGSDFKHKR SLKDHIRAFG PSHAPHSIDH LPAIVHHEVY EYDDQKGPSI  300
VHQEEEDDDD EKEDYGNVHV CYDEDDYSCS GTSSC*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator (Probable). Involved in leaf vasculature patterning (PubMed:18643975). {ECO:0000269|PubMed:18643975, ECO:0000305|PubMed:20541552}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006833554.30.0zinc finger protein WIP6
SwissprotQ9FX681e-112ZWIP6_ARATH; Zinc finger protein WIP6
TrEMBLW1NSR50.0W1NSR5_AMBTC; Uncharacterized protein
STRINGERM988320.0(Amborella trichopoda)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP4101597
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G13290.11e-110C2H2-like zinc finger protein
Publications ? help Back to Top
  1. Amborella Genome Project
    The Amborella genome and the evolution of flowering plants.
    Science, 2013. 342(6165): p. 1241089
    [PMID:24357323]