PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm_27.model.AmTr_v1.0_scaffold00092.72
Common NameAMTR_s00092p00113360, LOC18427246
Organism
Amborella trichopoda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
Family TCP
Protein Properties Length: 476aa    MW: 51812.8 Da    PI: 7.8236
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00092.72genomeTAGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP117.81.3e-36852262133
                                      TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt...... 65 
                                               g+kdrhsk+ T++g+RdRRvRls+++a++f+dLqd+L +d++sk++eWLl++a  ai el+++      
  evm_27.model.AmTr_v1.0_scaffold00092.72  85 SGGKDRHSKVMTAKGLRDRRVRLSVSTAIQFYDLQDRLNYDQPSKAVEWLLKAASDAISELPSLqgsfpd 154
                                              589*************************************************************876654 PP

                                      TCP  66 ..ssssaseceaesssssasnsssg.......kaaksaa.kskksqksaasalnlak.esrakararare 124
                                                s       ++ess+  ++  s++       +  + +  +s+ s++s  s+l+l++ + r kar+ra+e
  evm_27.model.AmTr_v1.0_scaffold00092.72 155 kpS-------KPESSEPVSDPRSEPeaepqglNPLTGSGcCSSTSETSRGSVLSLSRsDLRVKARQRAKE 217
                                              321.......2222222222222223445567788888889999*************999********** PP

                                      TCP 125 rtrekmrik 133
                                              rt+++++  
  evm_27.model.AmTr_v1.0_scaffold00092.72 218 RTAKEKSRA 226
                                              887766554 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036341.5E-3886224IPR005333Transcription factor, TCP
PROSITE profilePS5136930.98987145IPR017887Transcription factor TCP subgroup
PROSITE profilePS513709.095205223IPR017888CYC/TB1, R domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008285Biological Processnegative regulation of cell proliferation
GO:0009965Biological Processleaf morphogenesis
GO:0030154Biological Processcell differentiation
GO:0045962Biological Processpositive regulation of development, heterochronic
Sequence ? help Back to Top
Protein Sequence    Length: 476 aa     Download sequence    Send to blast
MEPDDALIAQ VSKRPKTSNG LFSKPVASKS KTKKPGHDHG ATQEEEDAEE EEEEEETKAS  60
KQAFSHGGWP HHLHTSRIIR VSRQSGGKDR HSKVMTAKGL RDRRVRLSVS TAIQFYDLQD  120
RLNYDQPSKA VEWLLKAASD AISELPSLQG SFPDKPSKPE SSEPVSDPRS EPEAEPQGLN  180
PLTGSGCCSS TSETSRGSVL SLSRSDLRVK ARQRAKERTA KEKSRASVQN LSLNAEAHDN  240
SGTSKSNNNS SNNNNGSFTD LLLDGNPSSI SATHQQNPSF MQKLHHEYLN SYMSGPTMLN  300
SSLIHPHRPQ NPNSSSCLIT TTQTQSTHLT NPSLSPPNSM TMAQFHQNPT NSSGFLGVDN  360
QELQSFSFVQ DHMAPVTSND YNFSMPSLSS SGYHRGTLQS NSSPFTHLHF QRFSPSENSN  420
TNVPFFIGTS AAAAAVAAVA ASVDNQYQAG LDARLQLCYG DGYRHSSDLK GKGKR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A6e-2392146155Putative transcription factor PCF6
5zkt_B6e-2392146155Putative transcription factor PCF6
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00169DAPTransfer from AT1G30210Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011620778.10.0transcription factor TCP2
RefseqXP_011620779.10.0transcription factor TCP2
TrEMBLW1NQM00.0W1NQM0_AMBTC; Uncharacterized protein
STRINGERM992160.0(Amborella trichopoda)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP18015163
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18390.22e-38TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 2
Publications ? help Back to Top
  1. Amborella Genome Project
    The Amborella genome and the evolution of flowering plants.
    Science, 2013. 342(6165): p. 1241089
    [PMID:24357323]