PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm_27.model.AmTr_v1.0_scaffold00092.111
Common NameAMTR_s00092p00142980
Organism
Amborella trichopoda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
Family NAC
Protein Properties Length: 321aa    MW: 36484.9 Da    PI: 6.5847
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00092.111genomeTAGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM163.57.9e-51111391129
                                       NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkya 69 
                                               lppGfrFhP+d+elv++yL kk+++ + +    + e+d++k+ePwdLp  +k + ke+yfF  rd+kya
  evm_27.model.AmTr_v1.0_scaffold00092.111  11 LPPGFRFHPRDDELVMDYLWKKIASCPSNS-PSMIELDLNKCEPWDLPDIAKVGGKEYYFFNLRDRKYA 78 
                                               79*************************888.56889************8778899************** PP

                                       NAM  70 tgkrknratksgyWkatgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrle 129
                                               tg+r+nrat sgyWkatgkd++v+++ +g+lvg++ktLvfy+grap+g+ktdWvmhe+rle
  evm_27.model.AmTr_v1.0_scaffold00092.111  79 TGTRTNRATVSGYWKATGKDRQVFDNqTGTLVGMRKTLVFYQGRAPNGTKTDWVMHEFRLE 139
                                               ************************9867788***************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.31E-597165IPR003441NAC domain
PROSITE profilePS5100556.72211165IPR003441NAC domain
PfamPF023651.4E-2412138IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 321 aa     Download sequence    Send to blast
MSFLDLVEAR LPPGFRFHPR DDELVMDYLW KKIASCPSNS PSMIELDLNK CEPWDLPDIA  60
KVGGKEYYFF NLRDRKYATG TRTNRATVSG YWKATGKDRQ VFDNQTGTLV GMRKTLVFYQ  120
GRAPNGTKTD WVMHEFRLEG PSSSSFSFPQ IPLKEDWVLC RVFYKSRGEG ATSNTEHDEF  180
QTMVGTNLIS GQTPLTLDEF GHLPCFSTPS QDMNHGLSHS PQTEENLHTK SLEMGTFKNI  240
LSQHGQHFSS ERNSIRIHWS HIKRFGGDPR IGLPNLGEEN LAINRASPCD ARPRDVSSPL  300
SEESYLSESS MPPMWDNLYY *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A3e-48716611169Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that mediates auxin signaling to promote lateral root development. Activates the expression of two downstream auxin-responsive genes, DBP and AIR3. {ECO:0000269|PubMed:11114891}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by auxin.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020518597.10.0NAC domain-containing protein 21/22 isoform X1
SwissprotQ84TE61e-70NAC22_ARATH; NAC domain-containing protein 21/22
TrEMBLW1NVI10.0W1NVI1_AMBTC; Uncharacterized protein
STRINGERM992550.0(Amborella trichopoda)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP1715800
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G56010.21e-71NAC domain containing protein 1
Publications ? help Back to Top
  1. Le Hénanff G, et al.
    Grapevine NAC1 transcription factor as a convergent node in developmental processes, abiotic stresses, and necrotrophic/biotrophic pathogen tolerance.
    J. Exp. Bot., 2013. 64(16): p. 4877-93
    [PMID:24043850]
  2. Amborella Genome Project
    The Amborella genome and the evolution of flowering plants.
    Science, 2013. 342(6165): p. 1241089
    [PMID:24357323]
  3. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  4. Xiao D, et al.
    SENESCENCE-SUPPRESSED PROTEIN PHOSPHATASE Directly Interacts with the Cytoplasmic Domain of SENESCENCE-ASSOCIATED RECEPTOR-LIKE KINASE and Negatively Regulates Leaf Senescence in Arabidopsis.
    Plant Physiol., 2015. 169(2): p. 1275-91
    [PMID:26304848]
  5. Huo X,Wang C,Teng Y,Liu X
    Identification of miRNAs associated with dark-induced senescence in Arabidopsis.
    BMC Plant Biol., 2015. 15: p. 266
    [PMID:26530097]
  6. Chen X, et al.
    Auxin-Independent NAC Pathway Acts in Response to Explant-Specific Wounding and Promotes Root Tip Emergence during de Novo Root Organogenesis in Arabidopsis.
    Plant Physiol., 2016. 170(4): p. 2136-45
    [PMID:26850273]
  7. Liu C,Wang B,Li Z,Peng Z,Zhang J
    TsNAC1 Is a Key Transcription Factor in Abiotic Stress Resistance and Growth.
    Plant Physiol., 2018. 176(1): p. 742-756
    [PMID:29122985]