PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm_27.model.AmTr_v1.0_scaffold00089.56
Common NameAMTR_s00089p00102760, LOC18429955
Organism
Amborella trichopoda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
Family ERF
Protein Properties Length: 404aa    MW: 44647.3 Da    PI: 8.4597
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00089.56genomeTAGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP265.21.3e-20242291255
                                      AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                                               y+GVr+++ +g+WvAeIr p++   r+r++lg+f+taeeAa a++ a+ kl+g
  evm_27.model.AmTr_v1.0_scaffold00089.56 242 LYRGVRQRH-WGKWVAEIRLPRN---RTRVWLGTFDTAEEAALAYDTAAYKLRG 291
                                              59******9.**********955...5*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.55E-33241301No hitNo description
PROSITE profilePS5103223.367242299IPR001471AP2/ERF domain
SuperFamilySSF541713.07E-23242300IPR016177DNA-binding domain
SMARTSM003802.5E-36242305IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.3E-32242300IPR001471AP2/ERF domain
PRINTSPR003672.3E-11243254IPR001471AP2/ERF domain
PfamPF008472.5E-14243291IPR001471AP2/ERF domain
PRINTSPR003672.3E-11265281IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 404 aa     Download sequence    Send to blast
MEEQAFEIAG YVQKELPCYF HAMAGKSLIA DPLVLNVIAE SACRGANRSD EQFPNSYLMG  60
KANQSSLCPT TGIGKEKVPE QPINSISAIL RFLNSNGVSS TKVNSINPNL ESNQTQLGLN  120
DPPSSSPSSS TTPSAPVLRL QIPETLQDSQ VVKNQSCEPI TTPNLDLCQI ELQLFRKQQE  180
LGLGWLQTHH RFASSPSNVY HLQSKQSNGG HGQLPNFLGP KTQRMKYMGR PLEGPKSSSP  240
KLYRGVRQRH WGKWVAEIRL PRNRTRVWLG TFDTAEEAAL AYDTAAYKLR GDYAHLNFPD  300
LKHRLKANSN GSSSHSATAA LLDAKLQAFN KSLTPQKETQ KVIDQPKLPL HQDTAITAPS  360
NQVKKETHQE SPSKSDWSDM DEVLLSRMPS LDLETIWDEL PAA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A3e-21241299160ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006840184.10.0ethylene-responsive transcription factor RAP2-13
TrEMBLW1P2I40.0W1P2I4_AMBTC; Uncharacterized protein
STRINGERN018590.0(Amborella trichopoda)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G13620.14e-34ERF family protein
Publications ? help Back to Top
  1. Amborella Genome Project
    The Amborella genome and the evolution of flowering plants.
    Science, 2013. 342(6165): p. 1241089
    [PMID:24357323]