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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
evm_27.model.AmTr_v1.0_scaffold00089.36 |
Common Name | AMTR_s00089p00081270, LOC18429933 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
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Family |
MIKC_MADS |
Protein Properties |
Length: 213aa MW: 24295.7 Da PI: 9.4235 |
Description |
MIKC_MADS family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
evm_27.model.AmTr_v1.0_scaffold00089.36 | genome | TAGP | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | SRF-TF | 88.9 | 2.7e-28 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
krie+++nrqvtf+kRr+gilKKA E+SvLCda+v++++fsstgk++ey++
evm_27.model.AmTr_v1.0_scaffold00089.36 9 KRIESSTNRQVTFTKRRTGILKKAREISVLCDAKVSLVLFSSTGKMFEYCT 59
79***********************************************96 PP
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2 | K-box | 77.8 | 2.9e-26 | 71 | 165 | 1 | 95 |
K-box 1 yqkssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKn 70
yq++sg++l++a++e+l+ e+ +kke+en++ ++Rhl+GedL+sL+ eL++Le+ Le ++ ++R+k++
evm_27.model.AmTr_v1.0_scaffold00089.36 71 YQRTSGNKLWDAQHEHLSAEVGMMKKENENMRVQLRHLMGEDLNSLTAGELNRLEDSLEVGIASVRAKQM 140
78999***************************************************************** PP
K-box 71 ellleqieelqkkekelqeenkaLr 95
e++++ ++ l+ ++ l+e+nk+L+
evm_27.model.AmTr_v1.0_scaffold00089.36 141 EHIHSRTQMLKSNKQILEEQNKQLQ 165
***********************97 PP
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Protein Features
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Database |
Entry ID |
E-value |
Start |
End |
InterPro ID |
Description |
SMART | SM00432 | 8.3E-39 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 31.973 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 1.22E-34 | 2 | 95 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 5.88E-40 | 2 | 80 | No hit | No description |
PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.5E-28 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 1.2E-22 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.5E-28 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.5E-28 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF01486 | 3.7E-20 | 82 | 166 | IPR002487 | Transcription factor, K-box |
PROSITE profile | PS51297 | 14.324 | 84 | 174 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0010093 | Biological Process | specification of floral organ identity |
GO:0005634 | Cellular Component | nucleus |
GO:0005737 | Cellular Component | cytoplasm |
GO:0003677 | Molecular Function | DNA binding |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
Protein Sequence Length: 213 aa
Download sequence Send
to blast |
MGRGKIEIKR IESSTNRQVT FTKRRTGILK KAREISVLCD AKVSLVLFSS TGKMFEYCTP 60 STSLKDMLGE YQRTSGNKLW DAQHEHLSAE VGMMKKENEN MRVQLRHLMG EDLNSLTAGE 120 LNRLEDSLEV GIASVRAKQM EHIHSRTQML KSNKQILEEQ NKQLQYIMHQ VDGNITELEQ 180 SYHHLQAERD FAAQGPGAFR VQPIQPNLQQ NK*
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Functional Description ? help
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Source |
Description |
UniProt | Probable transcription factor that may play role in specifying stamen and petal organ identity. {ECO:0000269|PubMed:23181568, ECO:0000269|Ref.1, ECO:0000305|PubMed:17920788}. |
Publications
? help Back to Top |
- Jaillon O, et al.
The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla. Nature, 2007. 449(7161): p. 463-7 [PMID:17721507] - Díaz-Riquelme J,Lijavetzky D,Martínez-Zapater JM,Carmona MJ
Genome-wide analysis of MIKCC-type MADS box genes in grapevine. Plant Physiol., 2009. 149(1): p. 354-69 [PMID:18997115] - Amborella Genome Project
The Amborella genome and the evolution of flowering plants. Science, 2013. 342(6165): p. 1241089 [PMID:24357323] - Grimplet J,Martínez-Zapater JM,Carmona MJ
Structural and functional annotation of the MADS-box transcription factor family in grapevine. BMC Genomics, 2016. 17: p. 80 [PMID:26818751]
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