PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm_27.model.AmTr_v1.0_scaffold00088.111
Common NameAMTR_s00088p00145510, LOC18427631
Organism
Amborella trichopoda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
Family C2H2
Protein Properties Length: 265aa    MW: 30149.8 Da    PI: 7.125
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00088.111genomeTAGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.70.00039101123123
                                               EEETTTTEEESSHHHHHHHHHHT CS
                                   zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                                               y+C++C + F ++  L  H++ H
  evm_27.model.AmTr_v1.0_scaffold00088.111 101 YECQYCFREFANSQALGGHQNAH 123
                                               99******************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.601.6E-497127IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576673.3E-697128No hitNo description
PROSITE profilePS5015711.572101128IPR007087Zinc finger, C2H2
PROSITE patternPS000280103123IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009736Biological Processcytokinin-activated signaling pathway
GO:0009740Biological Processgibberellic acid mediated signaling pathway
GO:0010026Biological Processtrichome differentiation
GO:0048510Biological Processregulation of timing of transition from vegetative to reproductive phase
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 265 aa     Download sequence    Send to blast
MVGDMGDWKA ASNLAHVDRV QDICLKRKLE DKKVRLFGFE VDSYVPKEEQ DINACFKRSK  60
GIETCQTVEV GDDQSSSNIL EQNERLDEAR SGSNEREDKK YECQYCFREF ANSQALGGHQ  120
NAHKKERQKN KRLQQLQARR NTLNCFLEPY QSYGSSYHSS MPWFYDAYYA PGFTIIGEKP  180
STPILLESSV DYMALDQNFK GFHFSSSLTP NESPAHDLCK SRLVQSTDSR ECPETRPLVI  240
KPSPSSIKKR VLGSLDLQLG LTMH*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006836743.10.0zinc finger protein 5
TrEMBLW1NRI40.0W1NRI4_AMBTC; Uncharacterized protein
STRINGERM995960.0(Amborella trichopoda)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP1020968
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06650.11e-13C2H2 family protein
Publications ? help Back to Top
  1. Amborella Genome Project
    The Amborella genome and the evolution of flowering plants.
    Science, 2013. 342(6165): p. 1241089
    [PMID:24357323]