PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella

Family

C2H2

Protein Properties

Length: 1208aa MW: 128259 Da PI: 4.2547

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00087.12	genome	TAGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	11.2	0.0012	59	81	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++Cg ++++++ +H r+H evm_27.model.AmTr_v1.0_scaffold00087.12 59 WVCHKCGWTYPNPHPSAKHRRNH 81 58*******************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE pattern	PS00028	0	61	81	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 1208 aa Download sequence Send to blast
MVIEKARRTL GEILEEFGLL RKFEERSGVF SFQVEIDMEA NKHKTSYHHP PGQDKNDIWV 60 CHKCGWTYPN PHPSAKHRRN HKKHCGKIEG FKLIDSDDKS HTNLSDKEAS DEDHEPQEAP 120 KPAAAASLSD DLKDLKDAGS EGLSNEKDVN SEVKREGINK TEEEESTDAV AEFTRTVTSL 180 VPATSSAVGS EHGSVMESLG HDSGVVSESS PLITDKMVNS GGLFPPDETM QHCEESTSKT 240 NGTEIKNETV ASDKGEIREL LLSSEDDPKD PLDSIGASEQ VEMDHNASGI GAIPSMSGLA 300 CILESDHRQV KVLGDSEPRT LHFEESHVVE AHSIHVPLGQ NESIHNNLSQ KPDASESKTE 360 QLDSFEDSFP EQRDESPVAE AAENSRISPN CPSKILDVGS APLTESTDMD GNVMESIGVA 420 ATIDSYVESD SVRNLSAMEI LAEKHAYEIN SNSCEVYGSS EVTDSKDSIS SSPEEKNSDA 480 LDKPSLDSDS GSVVAQVDEK KSEELEGLLV SGAETITKTG DHLRGSPDAE MAEVISSTHE 540 KGSHQSLSQG NKFMESLDQG HGGAKGKEAD ESNEGSTSSS GDQGEILQTD KESTLDQSAK 600 ICESNSIQAR DKALLDSEVD DGLDTHSKVT SAESILSAIS PLGEKDNVSR NAVAVDGLES 660 STSVSDEVNV STGRNPEVAV ADPSAVDLME VPCLDSGASF SSTKELSEEE ISRKTSQESH 720 SEVIAVNDPV FSVTLAVEGK ATESDSVGLA GTHAQISREG QKSSAAAMVT DSSGPVADET 780 EVTAPSLSKD VDDAEVTAPS LSKDVDDAEV TAPSLSKDLD SEVDDGLETH SKITSAESIL 840 SAISPLGEKY NVSGNSVAVD GLESSASVSD KVNVSTERNP EDAVSDSSAV DLMVGPRLDN 900 GESISSTKEL SEISKKASQE SHSEVIAVNN PVCSVTLAVE GKATESDRVG LAGTHAQVSR 960 EGQNSSAAAM VKDSSGPVAG EAEVTAPSLS KDVSLDSTSQ TDSLEGQWGS VSEPSTQDIP 1020 IEKEAAASNV SDAKANLKVA QGNPNTTYVF DAPSFMTLVE PGRGNDDPTT TAEIQPTKPQ 1080 GSQDSQAGWF PSLTQVVKDS EGRKKNEEII AKVTNWSTSK SHTPLRSLLN EANMEIKNKS 1140 PPPQDQPDMH VETAPSEMGK NPPASENKAN EVWNSPARMP VDSLKIEKRK PRGKPSWVPF 1200 VCCSSVN*

Sequence ? help Back to Top

Protein Sequence Length: 1208 aa Download sequence Send to blast

MVIEKARRTL GEILEEFGLL RKFEERSGVF SFQVEIDMEA NKHKTSYHHP PGQDKNDIWV  60
CHKCGWTYPN PHPSAKHRRN HKKHCGKIEG FKLIDSDDKS HTNLSDKEAS DEDHEPQEAP  120
KPAAAASLSD DLKDLKDAGS EGLSNEKDVN SEVKREGINK TEEEESTDAV AEFTRTVTSL  180
VPATSSAVGS EHGSVMESLG HDSGVVSESS PLITDKMVNS GGLFPPDETM QHCEESTSKT  240
NGTEIKNETV ASDKGEIREL LLSSEDDPKD PLDSIGASEQ VEMDHNASGI GAIPSMSGLA  300
CILESDHRQV KVLGDSEPRT LHFEESHVVE AHSIHVPLGQ NESIHNNLSQ KPDASESKTE  360
QLDSFEDSFP EQRDESPVAE AAENSRISPN CPSKILDVGS APLTESTDMD GNVMESIGVA  420
ATIDSYVESD SVRNLSAMEI LAEKHAYEIN SNSCEVYGSS EVTDSKDSIS SSPEEKNSDA  480
LDKPSLDSDS GSVVAQVDEK KSEELEGLLV SGAETITKTG DHLRGSPDAE MAEVISSTHE  540
KGSHQSLSQG NKFMESLDQG HGGAKGKEAD ESNEGSTSSS GDQGEILQTD KESTLDQSAK  600
ICESNSIQAR DKALLDSEVD DGLDTHSKVT SAESILSAIS PLGEKDNVSR NAVAVDGLES  660
STSVSDEVNV STGRNPEVAV ADPSAVDLME VPCLDSGASF SSTKELSEEE ISRKTSQESH  720
SEVIAVNDPV FSVTLAVEGK ATESDSVGLA GTHAQISREG QKSSAAAMVT DSSGPVADET  780
EVTAPSLSKD VDDAEVTAPS LSKDVDDAEV TAPSLSKDLD SEVDDGLETH SKITSAESIL  840
SAISPLGEKY NVSGNSVAVD GLESSASVSD KVNVSTERNP EDAVSDSSAV DLMVGPRLDN  900
GESISSTKEL SEISKKASQE SHSEVIAVNN PVCSVTLAVE GKATESDRVG LAGTHAQVSR  960
EGQNSSAAAM VKDSSGPVAG EAEVTAPSLS KDVSLDSTSQ TDSLEGQWGS VSEPSTQDIP  1020
IEKEAAASNV SDAKANLKVA QGNPNTTYVF DAPSFMTLVE PGRGNDDPTT TAEIQPTKPQ  1080
GSQDSQAGWF PSLTQVVKDS EGRKKNEEII AKVTNWSTSK SHTPLRSLLN EANMEIKNKS  1140
PPPQDQPDMH VETAPSEMGK NPPASENKAN EVWNSPARMP VDSLKIEKRK PRGKPSWVPF  1200
VCCSSVN*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011622058.1	0.0	uncharacterized protein LOC18430704 isoform X2
TrEMBL	W1P4I3	0.0	W1P4I3_AMBTC; Uncharacterized protein
STRING	ERN02564	0.0	(Amborella trichopoda)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP7449	2	2

Link Out ? help Back to Top
Phytozome	evm_27.model.AmTr_v1.0_scaffold00087.12

Publications ? help Back to Top
Amborella Genome Project The Amborella genome and the evolution of flowering plants. Science, 2013. 342(6165): p. 1241089 [PMID:24357323]