PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm_27.model.AmTr_v1.0_scaffold00085.101
Common NameAMTR_s00085p00165180, LOC18430851
Organism
Amborella trichopoda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
Family TALE
Protein Properties Length: 330aa    MW: 36407.7 Da    PI: 4.8707
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00085.101genomeTAGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox28.82.1e-092723062155
                                               HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS
                                  Homeobox  21 knrypsaeereeLAkklgLterqVkvWFqNrRake 55 
                                               k +yp+++++  LA+++gL+++q+ +WF N+R ++
  evm_27.model.AmTr_v1.0_scaffold00085.101 272 KWPYPTESDKIALAESTGLDQKQINNWFINQRKRH 306
                                               569*****************************885 PP
2ELK38.42.7e-13226247122
                                       ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                                               ELK+ LlrKYsgyL+sLkqEFs
  evm_27.model.AmTr_v1.0_scaffold00085.101 226 ELKDKLLRKYSGYLSSLKQEFS 247
                                               9********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012558.4E-2386130IPR005540KNOX1
PfamPF037905.5E-2288129IPR005540KNOX1
SMARTSM012561.5E-27138189IPR005541KNOX2
PfamPF037915.6E-25142188IPR005541KNOX2
PROSITE profilePS5121311.401226246IPR005539ELK domain
PfamPF037891.8E-10226247IPR005539ELK domain
SMARTSM011881.1E-7226247IPR005539ELK domain
PROSITE profilePS5007112.746246309IPR001356Homeobox domain
SuperFamilySSF466899.41E-20247323IPR009057Homeodomain-like
SMARTSM003891.2E-13248313IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.602.1E-28251310IPR009057Homeodomain-like
CDDcd000863.44E-13258310No hitNo description
PfamPF059207.4E-17266305IPR008422Homeobox KN domain
PROSITE patternPS000270284307IPR017970Homeobox, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010073Biological Processmeristem maintenance
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 330 aa     Download sequence    Send to blast
MDEIYGLHSA IGYSSAEGSA GMGSSLPPES LIAAAGDYLS SYVFNRDKIG GSGGAAAGGG  60
MEQLAELPPA TGENSISEVY GQEVATSIKA KIATHPRYPT LLEAYIECQK VGAPPEIANL  120
LEEIRRENHN YACNSNSVTG CLGADPELDQ FMESYCEVLV KYKSDLAKPF DEATTFLNKI  180
EMQLNNLCSG SSRTCASDEL AGSSDDELSG GEIDLQETRS RGEDRELKDK LLRKYSGYLS  240
SLKQEFSKKK KKGKLPKEAR QTLLDWWNIH YKWPYPTESD KIALAESTGL DQKQINNWFI  300
NQRKRHWKPS ENMQFAVMDT LSAPFYVDH*
Functional Description ? help Back to Top
Source Description
UniProtPlays a role in meristem function. Contributes to the shoot apical meristem (SAM) maintenance and organ separation by controlling boundary establishment in embryo in a CUC1, CUC2 and STM-dependent manner. Involved in maintaining cells in an undifferentiated, meristematic state. Probably binds to the DNA sequence 5'-TGAC-3'. {ECO:0000269|PubMed:16798887}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Seems to be repressed by AS2 and AS1 but induced by STM, CUC1 and CUC2. {ECO:0000269|PubMed:11311158, ECO:0000269|PubMed:16798887}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006841054.10.0homeobox protein knotted-1-like 2 isoform X2
SwissprotQ84JS61e-119KNAT6_ARATH; Homeobox protein knotted-1-like 6
TrEMBLW1P5150.0W1P515_AMBTC; Uncharacterized protein
STRINGERN027290.0(Amborella trichopoda)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP16717148
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G23380.11e-109KNOTTED1-like homeobox gene 6
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Amborella Genome Project
    The Amborella genome and the evolution of flowering plants.
    Science, 2013. 342(6165): p. 1241089
    [PMID:24357323]
  3. Khan M, et al.
    Repression of Lateral Organ Boundary Genes by PENNYWISE and POUND-FOOLISH Is Essential for Meristem Maintenance and Flowering in Arabidopsis.
    Plant Physiol., 2015. 169(3): p. 2166-86
    [PMID:26417006]