PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | evm_27.model.AmTr_v1.0_scaffold00084.29 | ||||||||
Common Name | AMTR_s00084p00111010 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
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Family | bHLH | ||||||||
Protein Properties | Length: 203aa MW: 22521.7 Da PI: 4.7975 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 11.1 | 0.00076 | 2 | 18 | 39 | 55 |
TCHHHHHHHHHHHHHHH CS HLH 39 sKaeiLekAveYIksLq 55 + a+iL A+eY+k+Lq evm_27.model.AmTr_v1.0_scaffold00084.29 2 DRASILDDAIEYVKELQ 18 679*************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.280.10 | 4.0E-7 | 1 | 34 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 8.67E-5 | 1 | 32 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 203 aa Download sequence Send to blast |
MDRASILDDA IEYVKELQML MKALQEELDV TTEEEQQQGN GGDGGAPLAT TPSSDSNNHG 60 DFSVMGERVQ VEVNQVGAHE FNLKIFCEKS SGGFARLMQA MDALGLEVIH VNITTYMSLV 120 LNVFKVEVCL RKDTTYMSLV LNVFKVEMRD NEAIQIEHVR DSLLKLTRNP NGWPSPVPKL 180 QHVHLRELLP PIGATNFSST HI* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006840628.3 | 1e-113 | transcription factor ABORTED MICROSPORES | ||||
TrEMBL | W1NXG8 | 1e-149 | W1NXG8_AMBTC; Uncharacterized protein | ||||
STRING | ERN02302 | 1e-150 | (Amborella trichopoda) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G16910.1 | 3e-29 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | evm_27.model.AmTr_v1.0_scaffold00084.29 |
Publications ? help Back to Top | |||
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