PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | evm_27.model.AmTr_v1.0_scaffold00084.1 | ||||||||
Common Name | AMTR_s00084p00025760 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
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Family | FAR1 | ||||||||
Protein Properties | Length: 95aa MW: 10636.8 Da PI: 4.8491 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 26.5 | 2.1e-08 | 53 | 93 | 2 | 43 |
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkree 43 fYn+YA++ GF++ ++ kk k+n+ ++++vC ke kr++ evm_27.model.AmTr_v1.0_scaffold00084.1 53 FYNAYAQRRGFNIGLDRPKKDKDNK-LWMQDYVCPKESKRDP 93 9****************99996666.99**********9986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 2.1E-5 | 53 | 93 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 95 aa Download sequence Send to blast |
MNIIGEDGGS SSGDIVGCDN IIATRDGKDN EGGHQKDLFV GLNFEFEDVA YLFYNAYAQR 60 RGFNIGLDRP KKDKDNKLWM QDYVCPKESK RDPK* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020530408.1 | 1e-16 | LOW QUALITY PROTEIN: protein FAR1-RELATED SEQUENCE 5-like | ||||
TrEMBL | W1P3R4 | 5e-63 | W1P3R4_AMBTC; Uncharacterized protein | ||||
STRING | ERN02274 | 8e-64 | (Amborella trichopoda) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G18960.1 | 5e-07 | FAR1-related sequence 12 |
Link Out ? help Back to Top | |
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Phytozome | evm_27.model.AmTr_v1.0_scaffold00084.1 |
Publications ? help Back to Top | |||
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