PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | evm_27.model.AmTr_v1.0_scaffold00083.21 | ||||||||
Common Name | AMTR_s00083p00067130 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
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Family | LBD | ||||||||
Protein Properties | Length: 115aa MW: 12461.9 Da PI: 8.8114 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 23.3 | 1.7e-07 | 1 | 31 | 69 | 99 |
DUF260 69 ardPvyGavgvilklqqqleqlkaelallke 99 ++dPvyG+vg i+ lq+q+++l++el+++++ evm_27.model.AmTr_v1.0_scaffold00083.21 1 MKDPVYGCVGAISVLQRQVHRLQKELDAANA 31 58************************99876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03195 | 2.4E-5 | 2 | 30 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 115 aa Download sequence Send to blast |
MKDPVYGCVG AISVLQRQVH RLQKELDAAN ADLIRFACAS PDMHNPILTP DQLLIRRIGN 60 SGSLSHPSLS HQNLTPHSLS HHQGSSDSFP NNGFPPTWSN TSPGGNTRRG ENRM* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 3e-17 | 1 | 38 | 79 | 116 | LOB family transfactor Ramosa2.1 |
5ly0_B | 3e-17 | 1 | 38 | 79 | 116 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020520762.1 | 3e-80 | LOB domain-containing protein 25 | ||||
TrEMBL | W1NY08 | 8e-79 | W1NY08_AMBTC; Uncharacterized protein | ||||
STRING | ERN02517 | 1e-79 | (Amborella trichopoda) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G63090.4 | 2e-16 | LBD family protein |
Link Out ? help Back to Top | |
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Phytozome | evm_27.model.AmTr_v1.0_scaffold00083.21 |
Publications ? help Back to Top | |||
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